Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00485
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 32 0.094
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 30 0.29
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 3.5
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 4.7
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 6.2
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 6.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 8.2
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 8.2
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 8.2
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 8.2
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 8.2
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 8.2
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 31.9 bits (69), Expect = 0.094
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = -2
Query: 550 WRILTEDILCECIINSIPGWSGFSDFPIWSYISGSSC--SFATNSLLIFS 407
W++L +I + ++ S+P +S F+ F +++ I G + S A S+ +FS
Sbjct: 513 WKLLLMEICIQVLVESLPVFSMFATFVVFTTIMGQTITPSIAFTSISLFS 562
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 97 LKIIEILKETEADTKNLFGRYGSQRMKDWQDVERNYEKE 213
L ++EI ++ + D L + +Q+M DW D E+ YE++
Sbjct: 689 LSLLEIYRDLDEDDVQLSIGHIAQQMLDWTDNEKLYERK 727
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 49 DIAALLSGSYINYFH-CLKIIEILKETEADTKNLFGRYGSQRMKDWQDV 192
D +L I F CL++IEI KET+A+ +F Q + W D+
Sbjct: 187 DSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVF---LEQILPPWMDM 232
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 294 KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQE 446
K E+ D + K +N +S EFL L Q + EKI+ E+V + +E
Sbjct: 78 KNEETTTDSDGKD----QNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEE 124
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 269 NLITNFLTSICAASAKYKFSFS*FLSTSCQSFILCDPYLPNKFLVS 132
N +T +L I S + S + + Q+F+LCDP P++ L S
Sbjct: 465 NWVTRYLLGI---SDHWALQMSPPTNVARQNFVLCDPDEPSRVLFS 507
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 466 WSYISGSSCSFATNSLLIFSPWIPSCLHKARNSDLLD 356
W Y SG N L + W +C+ K +SDL++
Sbjct: 310 WFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIE 346
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +3
Query: 219 VFSRGSTDAGQEISYEIPGLKRQIAKEEQAQ-----ADFEKKHAD-YLKNEASSKSEFLA 380
+++RGS EIS ++P ++AKE+++ AD +++ AD Y+ E + + +
Sbjct: 254 IYNRGSKGEKIEISQQVPENLIELAKEKRSALIEKLADLDEEIADIYVMEEDPTPEQLMG 313
Query: 381 LCKQ 392
++
Sbjct: 314 AIRR 317
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 285 QIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQL 395
QI+++ + F K+ +K+E S E LCKQL
Sbjct: 15 QISQQPETDLVFTKRSECKVKDELFSDKENSILCKQL 51
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
IW+YIS + LL S WI +CLH
Sbjct: 67 IWNYISVAEMG---GVLLFLSYWIWTCLH 92
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
IW+YIS + LL S WI +CLH
Sbjct: 95 IWNYISVAEMG---GVLLFLSYWIWTCLH 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,462
Number of Sequences: 5004
Number of extensions: 57055
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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