Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00485
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0147 + 12277012-12277207,12277401-12277495,12277608-122779... 49 3e-06
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 36 0.042
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 31 0.69
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 31 0.91
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 29 3.7
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480 29 4.9
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077... 28 6.4
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 28 6.4
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012 28 6.4
01_06_0845 - 32389889-32389909,32390074-32390241,32390334-323904... 28 6.4
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 28 8.5
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 28 8.5
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 28 8.5
>06_02_0147 +
12277012-12277207,12277401-12277495,12277608-12277949,
12278074-12278223,12278311-12278832,12279082-12279290,
12279412-12279544,12279814-12279954
Length = 595
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 22 AIQDMPAHQDIAAL-LSGSYINYFHCLKIIEILKETEADTKNLFGRYGSQRMKDWQDVER 198
A +P D + L L I Y KI IL E+ +++N+FGR +W+ + +
Sbjct: 47 AFASLPRDLDPSLLALEPDEIGYLEAKKIYGILLESNPESRNIFGRLTGSA-GEWEAIVK 105
Query: 199 NYEKENLYLAEAAQMLVRKL 258
YEK++++L EAAQ++V+ +
Sbjct: 106 AYEKDHVFLGEAAQIMVQNV 125
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/67 (28%), Positives = 40/67 (59%)
Frame = +3
Query: 270 PGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQEL 449
P ++Q+ K +Q A+ +++ AD + A S + + C++LG+QG +++EL+ + L
Sbjct: 167 PYQRKQMQKTQQQLAELDRREADIKRLAALSATRYAEACQELGLQGINVRQELIESAKTL 226
Query: 450 PEIYDQI 470
P + +I
Sbjct: 227 PSTFTKI 233
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/56 (28%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +3
Query: 402 QGEKIKRELVAKLQELPEIYDQIGKSLKPLQPGIEF--IMHSQSISSVRILQKLYQ 563
+G +++ +V KL+E+ + +Q ++L+ L+PGI+F ++++++ S V +L Y+
Sbjct: 355 KGWELEAAVVGKLEEIEGLVEQCNQALRKLKPGIDFQYMLNTKASSPVELLGTSYK 410
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +3
Query: 279 KRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEI 458
+RQ A+EE+ +AD EK++ Y A ++ AL + I G+ + E + E
Sbjct: 431 RRQAAREEEQKADAEKRNYAYQAAIAKAEEASKALRPEKNISGKHAESEELV----FGED 486
Query: 459 YDQIGKSLK 485
Y+ + KSL+
Sbjct: 487 YEDLQKSLE 495
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 324 KKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEIYDQIGKSLK 485
K+H DYLK E K + L KQ + E +++ ++ ++YD + K ++
Sbjct: 692 KEHGDYLKTEIEDKQKRLQAVKQSLLSIEAKDQDINNRINRAFKVYDLLEKRIE 745
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Frame = +3
Query: 255 ISYEIPGLKRQIA----KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKR 422
IS E+ L+ Q+ K + +AD E+ LK S E A CK + +
Sbjct: 933 ISQEVLSLRSQVENLTRKSQLLEADLERT-TKQLKEAISIAGEETAKCKAAKEVIKSLTA 991
Query: 423 ELVAKLQELPEIYDQIGKSLKPLQPGI----EFIMHSQSISSVR 542
+L ++LPE + S P PGI + + S+S+ S R
Sbjct: 992 QLKGMAEKLPEGAGLVKNSRLPPLPGISIPTDISVASESLGSPR 1035
>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
Length = 910
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 240 DAGQEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKI 416
D +E YE+ K + + + AD ++K L+NE S +A+ +L ++ K+
Sbjct: 90 DVVEEYEYEVNRCKVEALELSASTADHKRKRQQNLENEDLFNSGMVAVPDELAVKTRKL 148
>12_02_0683 +
22006770-22006935,22007030-22007274,22007524-22007727,
22007847-22007939,22008015-22008107,22008196-22008537,
22008675-22008737,22008812-22008892
Length = 428
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 620 EPPLSLEPDPIHIELDDDE 676
EPPL E + IH+E DDE
Sbjct: 32 EPPLPYEDEVIHVEQQDDE 50
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 589 AVNNHILQN-W*SFWRILTEDILCECIINSIPG 494
AV +IL + W S W + E +LC+C S G
Sbjct: 551 AVRTNILSSVWRSTWTTIPEMLLCDCTYTSCQG 583
>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
Length = 401
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -1
Query: 218 KFSFS*FLSTSCQSFIL--CDPYL-PNKFLVSASVSFSISMIFKQW 90
+F+F+ S S +S ++ CD L P+K +V+A S+ +I K W
Sbjct: 180 RFAFNEITSHSLKSLVIDSCDSKLCPSKLVVTAPAIASLCLIVKLW 225
>01_06_0845 -
32389889-32389909,32390074-32390241,32390334-32390453,
32390982-32391068,32391149-32391217,32391448-32391510,
32391648-32391989,32392245-32392337,32392457-32392660,
32392910-32393154,32393249-32393414
Length = 525
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 620 EPPLSLEPDPIHIELDDDE 676
EPPL E + IH+E DDE
Sbjct: 32 EPPLPYEDEVIHVEQQDDE 50
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +1
Query: 7 EKINNAIQDMPAHQDIAALLSGSYINYFHCLKI------IEILKETEADTKNLFGRYGSQ 168
EK+ + +++ I L G +INY C+ + E + + D K Y S
Sbjct: 281 EKLEDKMKETVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCSDVYAS- 339
Query: 169 RMKDWQDVERNYEKENLYLAE 231
+ +VER E +N Y AE
Sbjct: 340 -FDKYVEVER-LEGDNKYHAE 358
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = -3
Query: 507 TLYLAGVVLVISLFGHISQAAPAVSPLILS*SSHLGYQVVYTKPETLIYLMLHSLDSLHA 328
T +L G V+ I F IS APA + I + ++V + T IY + SL+SL A
Sbjct: 322 TGFLHGSVMFIVGFC-ISWNAPATNNPIFA-------EIVPERSRTSIYALDRSLESLFA 373
Query: 327 SFQNPLV 307
SF P+V
Sbjct: 374 SFAPPVV 380
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 617 GEPPLSLEPDPIHIELDDDEEQASGDQIDFGA 712
G PPL+ EPD L DDEE + + D A
Sbjct: 122 GSPPLAAEPDGF---LGDDEEDGAPSESDLAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,316,443
Number of Sequences: 37544
Number of extensions: 340510
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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