Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00485
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           32   0.53 
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        30   1.6  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.8  
SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)                  29   3.8  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         29   5.0  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  29   5.0  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   29   5.0  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   8.7  
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)              28   8.7  

>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score =  113 bits (271), Expect = 2e-25
 Identities = 48/75 (64%), Positives = 63/75 (84%)
 Frame = +1

Query: 7   EKINNAIQDMPAHQDIAALLSGSYINYFHCLKIIEILKETEADTKNLFGRYGSQRMKDWQ 186
           EKIN AIQDMP  ++I  LLSG++INYFHCL+I+E+LK +E+ TKN+FG Y S+RMKDWQ
Sbjct: 46  EKINAAIQDMPPVEEITTLLSGTFINYFHCLRIVELLKVSESGTKNIFGGYSSKRMKDWQ 105

Query: 187 DVERNYEKENLYLAE 231
           ++ R YEK+N+YL E
Sbjct: 106 EIIRLYEKDNVYLGE 120



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
 Frame = +3

Query: 264 EIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQ-------GEKIKR 422
           E   +   I+ E  A  +  +K  +Y  N A  K ++  +CK++GI+       GE IK 
Sbjct: 123 ECQDIVNTISMEPFAIQECTRKENEYTTNAAEYKEQYRKVCKKMGIKFSMTSLKGESIKT 182

Query: 423 ELVAKLQELPEIYDQIGKSLKPLQPGIEF 509
           EL+  L+ELP++Y  + +S K LQ  I++
Sbjct: 183 ELLHLLKELPDVYQTVSESTKDLQDTIQY 211



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +2

Query: 539 EDSPEALPILQYVIIHGNTTVYEWSYGEPPLSLEPDPIHIELDDDEEQASGDQIDFG 709
           E SPE  P+L Y++ HGNTTVY+W  G+ P +++        ++ +    G +IDFG
Sbjct: 229 ESSPEISPLLSYILEHGNTTVYQWRTGKVP-TIDWGESAATSEEIDWGDGGGEIDFG 284


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 22/106 (20%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
 Frame = +3

Query: 276 LKRQIAKEEQAQADF--EKKHADY------LKNEASSKSEFLALCKQLGIQGEKIKRELV 431
           LK +I+ +EQ +A+    K  + +      +K+++S ++      K+  I+  K++++++
Sbjct: 105 LKVKISDKEQERAELLSNKSRSPFKQATKSVKSDSSVRTSSTTPSKRAAIEAAKLEQKMI 164

Query: 432 A--KLQELPEIYDQIGKSLKPLQPGIEFIMHSQSISSVRILQKLYQ 563
           A  + QE+    D+I +  K L+   E  +  + +S+ +++Q++ +
Sbjct: 165 ALQRRQEIDRRRDEIERERKELERSSEREILREELSAAQVIQRILE 210


>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 999

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 25/77 (32%), Positives = 37/77 (48%)
 Frame = +3

Query: 276  LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
            LK+Q  KEE+ + D         +N  + K E+L   K+L    EK KRE   K ++  E
Sbjct: 865  LKKQKQKEEEEKQDKTLSSKKSFENWKAKKDEYLK--KEL---KEKKKREKTEKEKQEEE 919

Query: 456  IYDQIGKSLKPLQPGIE 506
             Y++  KS    Q  +E
Sbjct: 920  KYEKTIKSADEFQKWVE 936


>SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 25/77 (32%), Positives = 37/77 (48%)
 Frame = +3

Query: 276 LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
           LK+Q  KEE+ + D         +N  + K E+L   K+L    EK KRE   K ++  E
Sbjct: 4   LKKQKQKEEEEKQDKTLSSKKSFENWKAKKDEYLK--KEL---KEKKKREKTEKEKQEEE 58

Query: 456 IYDQIGKSLKPLQPGIE 506
            Y++  KS    Q  +E
Sbjct: 59  KYEKTIKSADEFQKWVE 75


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +3

Query: 234  STDAGQEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEK 413
            S    + IS E   LK+Q+A+ E   A   +K    L     S ++ +A+C      G +
Sbjct: 1458 SVQGFKPISAEPDELKKQLAEVEALHASLLEKRP-LLATAHDSGNKLVAVC-----DGPR 1511

Query: 414  IKRELVAKLQELPEIYDQI 470
            ++ ++  KLQ   E YD +
Sbjct: 1512 VEDDVAGKLQPFQEAYDAL 1530


>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 191 TSCQSFILCDPYLPNKFLVSASVSFSISMIF 99
           +SC SF +  P+ PN+  +  + S SI +IF
Sbjct: 57  SSCASFSILSPFFPNEAAIKGADSASIGIIF 87


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 249 QEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEA-SSKSEFLALCKQLGIQGEKIKRE 425
           +E S E   L  ++ + E    + EKK  + LKN+A SS  E+   CK+L  + E+ K  
Sbjct: 338 KETSSEYERLSEELGERENLLKESEKKRNE-LKNKALSSLKEYRVKCKKLEREAEQGKEA 396

Query: 426 L 428
           +
Sbjct: 397 M 397


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 249 QEISYEIPGLKRQIAKEEQA-QADFEKKHADYLKNEASSKSEFLALCKQL 395
           Q+   EI GLK  +AKE Q  QAD  ++  ++ K+  +   E L L + +
Sbjct: 690 QQYESEIQGLKDHLAKESQRHQADVRRRDQEHKKDITNIHKESLLLLRAI 739


>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +3

Query: 231 GSTDAGQEIS--YEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQ 404
           G+TD   +I   Y++  +KRQ  ++        K  ADY     S K   L  C+   ++
Sbjct: 72  GTTDDRADIRLYYKVNPVKRQWTEKSPTPKKLLKAGADYTIVSFSMKDFGLYQCRATNVK 131

Query: 405 GEKIK-RE--LVAKLQELPEI 458
           G++I+ RE  L+  +  +P++
Sbjct: 132 GQEIQSREFFLIGYVAAIPDV 152


>SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)
          Length = 190

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 82  NYFHCLKIIEILK--ETEADTKNLFGRYGSQRMKDWQDVERNYEKENLY 222
           NY  CL+ +EIL+  E+E D+K L  +   +R +   D E + E+E LY
Sbjct: 133 NYESCLENLEILEKDESEVDSKRL--KIAKKRFRS-ADEELSSEEEKLY 178


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = +3

Query: 276 LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
           LK + AKE   + +F  K    LKNE S+K +     K++  + EK  + L  K  +L +
Sbjct: 396 LKVKDAKEHFEKCEFLTKEMHRLKNEWSNKEKEY---KRMATEQEKESKSLRKKNNQLED 452

Query: 456 IYDQIGKS 479
                GKS
Sbjct: 453 ELTNQGKS 460


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +3

Query: 249 QEISYEIPGLKRQI-AKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRE 425
           ++IS ++  +K Q+ A EEQ      + +AD   +E   +    A  +++  Q + +K +
Sbjct: 549 EKISEQLKAVKEQVLALEEQVLKQQLRVYADDFTSERQDRERVQAEKEKISEQLKAVKEQ 608

Query: 426 LVAKLQELPEIYDQ 467
           ++A L+E   IY++
Sbjct: 609 VLA-LEEQLRIYEE 621


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 300 EQAQADFEKKH--ADYLKNE-ASSKSEFLALCKQLGIQGEKIKRE 425
           E+ + D  K+   AD +++E   +K E LAL K+L + GE+ KR+
Sbjct: 286 EKLRGDISKQFSDADEIQSELGKTKQEMLALQKELFLSGEREKRK 330


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +3

Query: 255  ISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKI---KRE 425
            I  E   L++  A  ++ QADFEK+    +++      E + + + L  Q  KI   K +
Sbjct: 1423 IKEENDQLRKMEADGQELQADFEKQLESLVESTDQLMQEKVEVIQTLEGQNAKIEAEKEQ 1482

Query: 426  LVAKLQELPEIYDQIGKSLKPLQPGIEFIMHS 521
            L+++L+   E  + + + L   +  +E I  S
Sbjct: 1483 LLSELKTQKEKLNTVIEELDDTKSTLEIIKES 1514


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 294  KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEIYDQIG 473
            K E+ QAD +    +  +N ++   +  A   +   Q E +KRE  +   E+ ++ DQ+G
Sbjct: 1495 KLEEVQADLDNSQKE-ARNYSTEMYKIKAAFDEQSEQVEALKRENKSLASEVNDLADQLG 1553

Query: 474  KSLK 485
            +  K
Sbjct: 1554 EGGK 1557


>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 279 KRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALC 386
           + Q+ KEE+A+   EK+  +  +NE S K   + +C
Sbjct: 204 EEQLRKEEEARRQQEKERREAKENELSPKPRGILVC 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,523
Number of Sequences: 59808
Number of extensions: 396807
Number of successful extensions: 1192
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)