Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00484
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.97
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 27 3.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.9
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 6.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.9
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 6.9
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 25 9.1
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.1
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 25 9.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 28.7 bits (61), Expect = 0.97
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 359 AVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSLPYSSLLPQQPDA 219
A+P N +P S ++L ++ +++N MTS P +++PQ A
Sbjct: 258 ALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSPAMAVVPQNKTA 304
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 274 IPKFSMERSLPLREILEKLGV 336
+ K+ +E LP+R IL+KLG+
Sbjct: 88 LEKYLIEEELPVRSILKKLGI 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 293 RGRYHLEKSWKNLGSEICSMEQLTS 367
+G YHL++ + + SE+ +++QL++
Sbjct: 2542 KGNYHLKEHEREVSSELLNLQQLSA 2566
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 74 TFHYMVSDELGAQILELPYKGSDISMYILLPPYSMKEGVSNII 202
T + + + G IL + + + IS YIL P + + + NI+
Sbjct: 301 TVNQIFGESTGISILPMTFDWNQISAYILSPLMAPADALMNIL 343
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 469 IFGFRSSRPAEPTPSLPTSLSYTFYTNVQPV 561
I+G R AE P TS+ YT Y P+
Sbjct: 874 IYGSNLIRLAEKLPKHSTSIDYTLYAKDDPL 904
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 717 CRLVTFAVQASIWLICNLHTKNIRIKTVNAYT 622
CR ++ AS L LH N+R+K +N +T
Sbjct: 452 CRSLSLLKVASKSLNSLLHQSNVRLKIINHFT 483
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 161 LPPYSMKEGVSNIIANLTPERLAAVVEESYMAEKS 265
L PYS +S +I+ P+ + A ES+ A KS
Sbjct: 303 LTPYSDASLLSVVISGSCPKAIKATASESFKALKS 337
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 417 FMYSIIEQNAVLLC-QRTEVSCSIEQISDPKF 325
F+YSI +Q + +C Q + S IE + P F
Sbjct: 109 FIYSIFKQTGIWICKQVADESSLIEMLKKPVF 140
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/78 (21%), Positives = 30/78 (38%)
Frame = -1
Query: 476 PKMAVAAAATVPSSLTSIFALCIASSNRMPCCSVNVLKSAVPLNRSPTPSFSRISLSGSD 297
P + ++ +T P ++ +S S S P S TP + + S
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSS 419
Query: 296 LSMENLGISTMTSLPYSS 243
+ +T TS+PY+S
Sbjct: 420 TPLTTTNCTTSTSVPYTS 437
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 295 RSLPLREILEKLGVGDLFNGTADFSTLTEQHGI--LFDDAIHKAKIDVNEEGTVAAAATA 468
RS+P+ L LG+ L TA + +G+ + +++ A + ++ V A
Sbjct: 7 RSIPITARLPSLGIRSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKLDNVEKALNK 66
Query: 469 IFGFRSSRP 495
+ G RP
Sbjct: 67 LSGVLQQRP 75
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 362 SAVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSLPYSS 243
SA+P S TPS S IS + + + I T +S +SS
Sbjct: 516 SAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,022
Number of Sequences: 5004
Number of extensions: 72881
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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