Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00484
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 72 4e-13
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 65 5e-11
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 58 8e-09
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 32 0.45
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 31 1.4
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18) 30 1.8
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 29 3.1
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016) 29 4.2
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8) 28 9.6
SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19) 28 9.6
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 72.1 bits (169), Expect = 4e-13
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 238 RRELYGREVIVEIPKFSMERSLPLREILEKLGVGDLFNGT-ADFSTLTEQHGILFDDAIH 414
RR + V V IPKF + + L LR +L+ LGV D+F+ AD S ++ G+ AIH
Sbjct: 226 RRLMINTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIH 285
Query: 415 KAKIDVNEEGTVAAAATAI 471
KA I+VNE GTVAAA T +
Sbjct: 286 KAHIEVNERGTVAAATTGV 304
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 17 AFFVSETRQTL--VPFMKQKGTFHYMVSDELGAQILELPYKGSDISMYILLP 166
AFFV E+ ++ V M +K ++ ++ +++ELPY G D +M I+LP
Sbjct: 153 AFFVPESHESKIEVEMMTRKMKVNFYYDADIKCRVVELPYSGDDTAMVIILP 204
Score = 31.9 bits (69), Expect = 0.59
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 510 FVANFPFVYVLYERPTSSILFMGVYRDPKK 599
F A+ PF++ ++ +P+S+ILF+G P +
Sbjct: 317 FYADHPFLFSIHHKPSSAILFLGKVMQPTR 346
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 65.3 bits (152), Expect = 5e-11
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +1
Query: 241 RELYGREVIVEIPKFSMERSLPLREILEKLGVGDLFN-GTADFSTLTEQHGILFDDAIHK 417
R + EV V +PKF++ + L E L+ +G DLF+ G AD S ++ ++ + +HK
Sbjct: 260 RNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGISAAP-LVVSEVVHK 318
Query: 418 AKIDVNEEGTVAAAATAIFGFRSSRPAEP 504
A ++VNEEGT+AAAAT + S P P
Sbjct: 319 AFVEVNEEGTIAAAATGVGIMLMSMPMNP 347
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +2
Query: 5 TRKEAFFVSETRQTLVPFMKQKGTFHYMVSDELGAQILELPYKGSDISMYILLPPYSMKE 184
T+ F + +++ V FM Q F Y+ S LG QI+ELPY G +SM +LLP + +
Sbjct: 181 TQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLP--NEVD 238
Query: 185 GVSNIIANLTPERL 226
G+ + ++L E L
Sbjct: 239 GLGKLESSLNKETL 252
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 510 FVANFPFVYVLYERPTSSILFMGVYRDPKK 599
F AN PF++++ T ++LFMG P K
Sbjct: 349 FYANHPFLFLIRHNDTGAVLFMGRLVVPDK 378
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 58.0 bits (134), Expect = 8e-09
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 EVIVEIPKFSMERSLPLREILEKLGVGDLFN-GTADFSTLTEQHGILFDDAI-HKAKIDV 432
+V V IPKF M L E L++LG+ +F+ ADF+ ++ LF A+ HKA ++V
Sbjct: 229 DVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEV 288
Query: 433 NEEGTVAAAAT-AIFGFRSSRPAEP 504
NEEGT AAAAT AI R + EP
Sbjct: 289 NEEGTEAAAATAAIMMMRCAIMREP 313
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = +2
Query: 20 FFVSETRQTLVPFMKQKGTFHYMVSDELGAQILELPYKGSDISMYILLPPYSMKEGVSNI 199
F + + + V M QK F Y+ SD+ ++LELPY + +SM ++LP + EG++
Sbjct: 149 FRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKLLELPYVDTQLSMVLVLPDET--EGLARF 206
Query: 200 IANLTPERLAAV 235
+LT +++ +
Sbjct: 207 EQDLTHDKMTDI 218
>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 896
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 211 DPRASGCCGRRELYGREVIVEIPKFSMERSLPLREILEK 327
DPR CCG R +Y V+I K R +PLR + EK
Sbjct: 471 DPRKFKCCGNRYVYN----VKIQKCCFGRVVPLRTVCEK 505
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 501 FCRSRRTEPEDGGRSCCHSTFFVNVNL 421
F RSRR++P +GGR FF+++ L
Sbjct: 240 FSRSRRSDPINGGRKLGGGVFFISIGL 266
>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
Length = 2111
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 395 RMPCCSV----NVLKSAVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSL 255
RM CC +L SA+ P P S + + LS+ LGI+ M+SL
Sbjct: 1955 RMTCCLTLLISTMLASAMFYQTGPAPPSSEVVIGPLRLSVRQLGIAVMSSL 2005
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 384 LLCQRTEVSCSIEQISDPKFFQDFSKW*RPLHGKLRN 274
LLCQ E CS+E+I + + S + +H L+N
Sbjct: 666 LLCQLDEGKCSVEEICSSQVVKRISTRLKAMHNSLKN 702
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = -3
Query: 753 WLLPIIYVQS--SYCRLVTFAVQASIWLI-CNLHTKNIRIKTVNAYTQ 619
W+ I+Y+Q SY + V + + LI C ++++ I KT++AY++
Sbjct: 337 WISLILYIQRLPSYGKYVIMLYRMFVTLIKCGIYSRRIYQKTIDAYSR 384
>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
Length = 872
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 135 PLYGSSKICAPSSSLTI*WKVPFCFMNGTRVCLVSETK 22
P Y + + +P++S+T +K + F N VCLVS+ +
Sbjct: 321 PDYETKEQDSPAASMTFEFKKSYVFFNNLIVCLVSDVE 358
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 485 ERNPKMAVAAAATVPSSLTSIFALCIASSNRMPCCSVNVLKSAVPLNRSPTPSFSRIS 312
E + +++A A T+ +S S + S++ + S+N +K VP + PT +F IS
Sbjct: 181 EFHSSVSIAPARTITTSEGS-YVQMTCSASAVDLSSINWVKDGVPQAKGPTLTFPSIS 237
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 130 QRQ*HQHVHSTTALLYEGRSE*YYR*LDPRASGCCGRRELYGREVIVEIPKFSMERSLPL 309
+R+ + + + + GR E YYR L GRRELY R + + + + R L
Sbjct: 2060 RRELYYRILTLHVVCLAGRRELYYRILTLHVVCLAGRRELYYRILTLHVVCLAGRRELHY 2119
Query: 310 R 312
R
Sbjct: 2120 R 2120
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 208 LDPRASGCCGRRELYGREVIVEIPKFSMERSLP 306
LDP + CC R EL R ++ S+ ++P
Sbjct: 1359 LDPASENCCSRNELSERRHVLNNSPLSLHGTMP 1391
>SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)
Length = 335
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 558 WLDVRIERIRKGSWQRRGRFCRSRRTEPED 469
WL + ++ WQ+ +FC + R+ P+D
Sbjct: 235 WLCLAENKVNDLDWQKTVKFCFNERSNPDD 264
>SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19)
Length = 501
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 459 SCCHSTFFVNVNLCFM 412
SCCH N+NLCF+
Sbjct: 305 SCCHFVATFNINLCFL 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,929,436
Number of Sequences: 59808
Number of extensions: 539750
Number of successful extensions: 1701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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