Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00482
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 139 2e-33
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 138 5e-33
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 1e-31
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 120 2e-27
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 74 1e-13
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 60 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 7e-04
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.0
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 2.4
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 4.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 28 7.3
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 9.6
SB_630| Best HMM Match : Pox_F17 (HMM E-Value=2.4) 28 9.6
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.6
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 9.6
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 139 bits (337), Expect = 2e-33
Identities = 64/86 (74%), Positives = 75/86 (87%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 434
NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SS
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISS 121
Query: 435 MVLTKMKETAEAYLGKTVQNAVITVP 512
MVL KMKETAEAYLG+ V +AVITVP
Sbjct: 122 MVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 132 bits (318), Expect = 4e-31
Identities = 67/87 (77%), Positives = 74/87 (85%), Gaps = 2/87 (2%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDSAAVLRR 688
PAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFD
Sbjct: 147 PAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGTFD 206
Query: 689 VH-LTIEDG-IFEVKSTAGDTHLGSED 763
V LTI+DG +FEVKSTAGDTHLG ED
Sbjct: 207 VSILTIDDGSLFEVKSTAGDTHLGGED 233
Score = 124 bits (300), Expect = 6e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +1
Query: 73 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 252
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 253 ITP 261
+ P
Sbjct: 61 LNP 63
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 138 bits (334), Expect = 5e-33
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 434
NP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SS
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISS 121
Query: 435 MVLTKMKETAEAYLGKTVQNAVITVP 512
MVLTKMKETAEAYLG V +AV+TVP
Sbjct: 122 MVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 135 bits (326), Expect = 4e-32
Identities = 70/86 (81%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDSAAVLRR 688
PAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+D
Sbjct: 147 PAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGGTFD 206
Query: 689 VH-LTIEDGIFEVKSTAGDTHLGSED 763
V LTIEDGIFEVKSTAGDTHLG ED
Sbjct: 207 VSVLTIEDGIFEVKSTAGDTHLGGED 232
Score = 128 bits (308), Expect = 6e-30
Identities = 59/63 (93%), Positives = 61/63 (96%)
Frame = +1
Query: 73 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 252
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 253 ITP 261
+ P
Sbjct: 61 MNP 63
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 134 bits (323), Expect = 1e-31
Identities = 70/86 (81%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDSAAVLRR 688
PAYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFD
Sbjct: 240 PAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFD 299
Query: 689 VH-LTIEDGIFEVKSTAGDTHLGSED 763
V L+IEDGIFEVKST GDTHLG ED
Sbjct: 300 VSVLSIEDGIFEVKSTHGDTHLGGED 325
Score = 128 bits (309), Expect = 5e-30
Identities = 58/64 (90%), Positives = 61/64 (95%)
Frame = +1
Query: 73 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 252
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 253 ITPT 264
+ PT
Sbjct: 61 MNPT 64
Score = 115 bits (277), Expect = 4e-26
Identities = 64/111 (57%), Positives = 73/111 (65%), Gaps = 25/111 (22%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV-- 428
NP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVN 121
Query: 429 -----------------------SSMVLTKMKETAEAYLGKTVQNAVITVP 512
SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 122 EAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 423 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 512
++SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAG 556
PAYFNDSQRQATKDAG
Sbjct: 172 PAYFNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 120 bits (288), Expect = 2e-27
Identities = 59/86 (68%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDSAAVLRR 688
PAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FD
Sbjct: 845 PAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGTFD 903
Query: 689 VH-LTIEDGIFEVKSTAGDTHLGSED 763
V LTI++G+FEV +T GDTHLG ED
Sbjct: 904 VSLLTIDNGVFEVVATNGDTHLGGED 929
Score = 118 bits (283), Expect = 7e-27
Identities = 55/86 (63%), Positives = 68/86 (79%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 434
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 435 MVLTKMKETAEAYLGKTVQNAVITVP 512
MVLTKMKETAEAYLGK V +AV+TVP
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +1
Query: 91 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAITP 261
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 74.1 bits (174), Expect = 1e-13
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFD-SAAVLR 685
PA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ D L
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTLD 235
Query: 686 RVHLTIEDGIFEVKSTAGDTHLGSED 763
L I+ G+F + AG+ LG +D
Sbjct: 236 VSLLNIQGGMFVTMAMAGNNRLGGQD 261
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 252
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 253 ITP 261
I P
Sbjct: 90 INP 92
Score = 62.1 bits (144), Expect = 5e-10
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEVS 431
NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIG 150
Query: 432 SMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA 569
V+ K++ AE L TV AV++VP +K + ++ SLA
Sbjct: 151 GYVIKKLRTMAERNLTTTVTKAVMSVP-AEFDIKQRNATVKAASLA 195
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 431
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 432 SMVLTKMKETAEAYLGKTVQNAVITVP 512
+M+ T++K TAE L V + VI+VP
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +2
Query: 491 ECSYHGPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 661
+C P+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 662 FDSAAVLRRVHLT-IEDGIFEVKSTAGDTHLGSED 763
D +V +T G +V STA + +LG D
Sbjct: 258 VDIGHSSLQVCITAFLKGQLKVLSTAVEPNLGGRD 292
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 91 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 246
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/74 (55%), Positives = 45/74 (60%), Gaps = 26/74 (35%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIA 616
PA+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIA
Sbjct: 46 PAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIA 105
Query: 617 YGLDKK--GTGERN 652
YGLDK G ERN
Sbjct: 106 YGLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +3
Query: 378 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 512
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Frame = +2
Query: 509 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDSAA 676
P +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D A
Sbjct: 113 PPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGA 172
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 372 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 512
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 142 GKVEIIANDQGNRTTPSYVAFTDTERLI 225
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 695 LTIEDGIFEVKSTAGDTHLGSED 763
L I+ G+FEVK+T GDT+LG ED
Sbjct: 17 LEIQKGVFEVKATNGDTYLGGED 39
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 151 EIIANDQGNRTTPSYVAFT-DTERL 222
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 369 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQK 548
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 549 MQ 554
Q
Sbjct: 714 SQ 715
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 60 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 236
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 237 QEPGGDNPNNTIFDA 281
G +P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 554 LHLLWLVFESH*STRDRDNCILHSFAKIS 468
++ LWL F + S+ D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 466 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 287
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 286 RLASNIVL 263
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +1
Query: 580 PNHQ*TDCCCDCLRS*QKGYWRTKCTYL*LGGGTSTCPSYHRGWYLRGEIHRRRHP 747
P + C +C R G++ CT GGG S P R R + RRR P
Sbjct: 81 PRQASNEKCYECGRV---GHFARDCTRRRYGGGRSPSPRGRRRSRSRSPVRRRRSP 133
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +1
Query: 112 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAITPTTQYSMPNVS 291
T++ + H I+ N G +TP + T A + + +TPT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 292 SDVSSKMLLCKP 327
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 101 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 244
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_630| Best HMM Match : Pox_F17 (HMM E-Value=2.4)
Length = 160
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 503 HGPAYFNDSQRQATKDAGT-ISGLNVLRIINEPTAAAI--AYGLDKKGTGERNVLIFDSA 673
HGP + N D GT I ++ + + P + A +++ GER + A
Sbjct: 23 HGPTFLNRPFSSLNCDEGTYIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYWALA 82
Query: 674 AVLRRVHLTIEDGIFEVKSTAGDTHL 751
+ ++ ++G+ EV AG+ L
Sbjct: 83 ECILAYYVGTDEGVSEVLHVAGEKRL 108
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 661 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 575
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 101 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 244
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = -1
Query: 767 SNPHFPSGCRRRWISPRRY----------HPRW*DGHVEVPPPSQR*VHFVLQYP 633
S+P +P R SP RY HPR+ H+ PP S R + L+YP
Sbjct: 365 SHPRYPPSPLRYLPSPIRYPPSHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYP 419
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,692,770
Number of Sequences: 59808
Number of extensions: 662967
Number of successful extensions: 2797
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2781
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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