Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00479
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 131 1e-31
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 84 2e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 64 2e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 4e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 50 3e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 4e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 6e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 7e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.011
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.7
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 2.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 26 5.2
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 26 6.9
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 26 6.9
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.2
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 131 bits (316), Expect = 1e-31
Identities = 58/92 (63%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Frame = +1
Query: 235 SEYSEDDKAVEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRA 408
S + +A EDLDFFIG++A + + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR
Sbjct: 60 SGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRC 119
Query: 409 EPEDHHFLMTEPPLNTPENREYLAEIMFESFN 504
EPEDH+FL+TEPPLN PENRE AEIMFESFN
Sbjct: 120 EPEDHYFLLTEPPLNPPENRENTAEIMFESFN 151
Score = 122 bits (294), Expect = 6e-29
Identities = 57/76 (75%), Positives = 66/76 (86%)
Frame = +3
Query: 504 CAGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPI 683
CAGLYIAVQAVLALAASW S +R+ TG VVDSGDGVTHI+PVAEGYVIGS IK +P+
Sbjct: 152 CAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL 211
Query: 684 AGRNITSFIQSLLRER 731
AGR++T F+QSLLR+R
Sbjct: 212 AGRDVTYFVQSLLRDR 227
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIK 214
++D GTGY+KLG+AGN P ++ P+ IA +
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATR 38
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPL 110
Query: 451 NTPENREYLAEIMFESFNVQAF 516
N NRE + +I+FE+FN AF
Sbjct: 111 NPKSNREKMTQIIFETFNAPAF 132
Score = 69.7 bits (163), Expect = 4e-13
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +3
Query: 516 YIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRN 695
Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR+
Sbjct: 133 YVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Query: 696 ITSFIQSLLRER 731
+T ++ +L ER
Sbjct: 185 LTDYLMKILMER 196
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 101 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
M + + A VID G+G K GFAG+ P+ + PS +
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIV 35
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +3
Query: 510 GLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAG 689
G+Y+A+QAVL+L A S +G+VVDSGDGVTHIVPV E V+ + + +AG
Sbjct: 131 GVYVAIQAVLSLYAQGLS--------SGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182
Query: 690 RNITSFIQSLL 722
R+ T ++ SLL
Sbjct: 183 RDATRYLISLL 193
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 VEDLDFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMT 438
V+ D +GDEA VKYP+ +GI+ D++ M + + F+ L+ +P L+T
Sbjct: 47 VQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT 106
Query: 439 EPPLNTPENREYLAEIMFESF 501
EPP+N NRE + E MFE +
Sbjct: 107 EPPMNPVANREKMCETMFERY 127
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTI 205
V+D GTG+ K+G+A + P+F PS +
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIV 33
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.3 bits (147), Expect = 4e-11
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEP 444
D F+G EA G ++ P+ GI+++W ME I ++ + L PE+H L+TEP
Sbjct: 55 DMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEP 113
Query: 445 PLNTPENREYLAEIMFESFNVQAFTLLYKPFL 540
PL N+E +AE +E+ NV A + +P L
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQPVL 145
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
L ++Q VLAL AS +RT TGIV++ GDG+TH VP+ +G+ I S I+ I GR
Sbjct: 137 LSFSLQPVLALYAS--ART------TGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188
Query: 693 NITSFIQSLLRE 728
++T ++Q LR+
Sbjct: 189 DVTDYLQLQLRK 200
Score = 34.3 bits (75), Expect = 0.020
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIA-IKETAKVGDQSTRRMIRLSKIWIFS 283
D+ P C ID G+G+ K GFAG+ P+ + P+ + IK + + M S+
Sbjct: 8 DNQPIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Query: 284 SVMKLLKP 307
++K+ +P
Sbjct: 67 GLLKIQRP 74
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +1
Query: 310 GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIM 489
G +K +R+G VE+WD+ + + L+ P +H L+TEP N PENR E M
Sbjct: 62 GMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 490 FESFNVQA 513
FES A
Sbjct: 122 FESLRCPA 129
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPS 199
GD + A VID G+ +T++GF+G P+ ++PS
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +1
Query: 310 GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIM 489
G VK +GI++DW+ E+ + + L+ P ++ ++TEP N R+ + E
Sbjct: 65 GMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAA 124
Query: 490 FESFNVQAFTL 522
FE +V AF L
Sbjct: 125 FEQLHVPAFYL 135
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIK 214
+ +P+ VID G+ +T+ G+AG + P I+PS ++
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVR 43
Score = 32.3 bits (70), Expect = 0.080
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 516 YIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRN 695
Y+ QAV A+ KS T ++VD G + PV +G +I I +AG
Sbjct: 134 YLTKQAVCVAFANSKS--------TALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDF 185
Query: 696 ITSFIQSLLREREVGIPP 749
+ + I+ L + PP
Sbjct: 186 LNANIEQLFNTMNIEFPP 203
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 253 DKAVEDLDFFIG-DEAFEATGYSV-KYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHH 426
D+ + +G D E S+ + P ++ +WDLME+ ++ K L + +H
Sbjct: 59 DRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHP 117
Query: 427 FLMTEPPLNTPENREYLAEIMFESFN 504
MTEP N R + E++FE +N
Sbjct: 118 ICMTEPLANPTYVRSTMTELLFELYN 143
Score = 32.7 bits (71), Expect = 0.060
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
LY A + + + + + +GIV++ G+ +H++PV G I S K I G
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGS 200
Query: 693 NITSFIQSLLREREVGIP 746
+S++ L + + P
Sbjct: 201 QSSSYLLKLFQIKYPSFP 218
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQST 244
VID G+ + G+ G K+P+ + + ++ K+ ST
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTST 67
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +3
Query: 594 IVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPE 752
+V+DSG THI+PV + V +K + + G+ +T++++ ++ R+ + E
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMMEE 211
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/84 (23%), Positives = 33/84 (39%)
Frame = +1
Query: 310 GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIM 489
GY V + + WDL+ R + + D+ L+T+P P +++
Sbjct: 66 GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 490 FESFNVQAFTLLYKPFLLWLRHGS 561
FE F A+ L+ HGS
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGS 141
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 328 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHF----LMTEPPLNTPENREYLAEIMFE 495
P++ G V DW+ ++ + + ++ L +P D F + P + +RE + FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 496 SFNVQAFTLLYKPFL 540
V FT+ Y+P +
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 659 SNNISFCNWNNVSNAISAVYYDASEGAFSRRT*LP*RSQSKNGLYSNV 516
S+N ++ WN+ S+ S+V+ + + + S + +P S + Y N+
Sbjct: 348 SSNTTYFYWNSTSSLSSSVFTNTTSSSNSTNSSIPTTYPSNSTTYQNI 395
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 219 VSFIAMVDGIINCGSLLPAKPSLVYPVPTSI-TQAGKWSP 103
V+F M+ +I+C +++ AKPSL PV + G W+P
Sbjct: 2278 VAFTLMLAQVISCITIMIAKPSL--PVSDRVFPNLGAWNP 2315
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +1
Query: 256 KAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 435
K +E LD E + + VK + + L RY VF + + E E +
Sbjct: 331 KVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQF 390
Query: 436 TEPPLNTPENREYLAEIMFESFN 504
+ LN EN+E + EI + N
Sbjct: 391 GKLDLNDTENKELVTEIFDSAIN 413
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -1
Query: 367 PLNPSLLRYRGAQDTLQSILWLQKLHHR*KNPNLRQPY------HPPSTLIANFCSFFY 209
PLN + Y +DT SI+ +L HR P+LR+P HPPS + FC F+
Sbjct: 359 PLNTYNIYYTN-EDT--SIVLDTQLSHR-LLPSLRKPLLNFVKVHPPSQKLLRFCRAFF 413
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 270 IFDSLIILRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 145
+ + I ++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 184 VINLYIWIKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 247 EDDKAVEDLDFFIGDEAFEA 306
EDDK ++DL+F IG + +EA
Sbjct: 482 EDDK-IDDLNFLIGPKMYEA 500
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -2
Query: 327 ILYRVSCGFKSFITDEKIQIFDSLIILRV 241
+LY ++CG+ F D Q++ +++ +V
Sbjct: 457 LLYEMTCGWSPFYADNTQQLYKNIVFGKV 485
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 426 FLNDRASAQHSRKQRIFSRNHV*VI*CAGLYIAVQAVLALAASWKSRTS 572
F+ND S H R+Q+ +R H I C+ VL +S KS S
Sbjct: 335 FVNDPNSTSHDRRQKRPTRRH---IPCSNKSSGSSTVLGNNSSSKSENS 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,744
Number of Sequences: 5004
Number of extensions: 70167
Number of successful extensions: 199
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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