Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00479
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 136 2e-32
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 109 2e-24
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_56| Best HMM Match : Actin (HMM E-Value=0) 82 4e-16
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 82 4e-16
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 66 3e-11
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_54| Best HMM Match : Actin (HMM E-Value=0) 63 2e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 62 4e-10
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 58 8e-09
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 38 0.012
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.20
SB_42786| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 30 1.8
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16) 30 1.8
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5) 30 1.8
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 2.4
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 29 3.2
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 29 5.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 28 7.3
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 28 7.3
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 28 9.7
SB_29969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 136 bits (328), Expect = 2e-32
Identities = 62/78 (79%), Positives = 69/78 (88%)
Frame = +3
Query: 522 AVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNIT 701
A +AVLALAASW SR ERT TG V+DSGDGVTH++PVAEGYVIGSCIKHIPIAGR+IT
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 702 SFIQSLLREREVGIPPEQ 755
F+Q LLRERE+GIPPEQ
Sbjct: 100 FFVQQLLREREMGIPPEQ 117
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 211 KRNCKSWRSEYSEDDKAVEDLDFFIGDEAFEATGYSVK 324
K + K K VEDLDFFIGDEA + Y+ K
Sbjct: 5 KESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 109 bits (262), Expect = 2e-24
Identities = 46/75 (61%), Positives = 55/75 (73%)
Frame = +1
Query: 211 KRNCKSWRSEYSEDDKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCV 390
K + K K VEDLDFFIGDEA + Y+ K+P+RH IVEDWDLMER+ EQC+
Sbjct: 262 KESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWPIRHAIVEDWDLMERFWEQCI 321
Query: 391 FKYLRAEPEDHHFLM 435
FKYLRAEPEDH+FL+
Sbjct: 322 FKYLRAEPEDHYFLL 336
Score = 61.3 bits (142), Expect = 9e-10
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 531 AVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 638
AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 152 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRR 250
K G+ K Q TIAIKE+AKVG++S R
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGR 274
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 112 NPKANREKMTQIMFETFNSPA 132
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR
Sbjct: 133 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGR 184
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 185 DLTDYLMKILTER 197
Score = 35.5 bits (78), Expect = 0.048
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + A V+D G+G K GFAG+ P+ + PS +
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 36
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 111 NPKANREKMTQIMFETFNSPA 131
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR
Sbjct: 132 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 184 DLTDYLMKILTER 196
Score = 35.9 bits (79), Expect = 0.037
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 101 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
M D + A V+D G+G K GFAG+ P+ + PS +
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 35
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 111 NPKANREKMTQIMFETFNSPA 131
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR
Sbjct: 132 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 184 DLTDYLMKILTER 196
Score = 36.3 bits (80), Expect = 0.028
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 101 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
M D + A V+D G+G K GFAG+ P+ + PS +
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 35
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 112 NPKANREKMTQIMFETFNSPA 132
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR
Sbjct: 133 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 185 DLTDYLMKILTER 197
Score = 34.7 bits (76), Expect = 0.084
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + A V+D G+G K GFAG+ P+ + PS +
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 36
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 112 NPKANREKMTQIMFETFNSPA 132
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAE 644
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ E
Sbjct: 133 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPIYE 168
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + A VID G+G K GFAG+ P+ + PS +
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIV 36
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY + I + +AGR
Sbjct: 95 MYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGR 146
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 147 DLTDYLMKILTER 159
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMER 372
D ++GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 84
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 101 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
M D + A VID G+G K GFAG+ P+ + PS +
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIV 35
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TG+V DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 11 VYVAIQAVLSLYASGRT--------TGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGR 62
Query: 693 NITSFIQSLLRER 731
++T ++ L+ ER
Sbjct: 63 DLTDYLMKLMTER 75
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +3
Query: 510 GLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAG 689
G+YIA+QAVL L A + TG+V+DSGDGVTHI PV EG+ + + + IAG
Sbjct: 135 GVYIAIQAVLTLYA--------QGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 690 RNITSFIQSLL 722
R+IT ++ L+
Sbjct: 187 RDITKYLIKLM 197
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 262 VEDLDFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFL 432
+E D +GDEA + V YP+ +GIV +WD M +++ F + +P + L
Sbjct: 50 IEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVL 108
Query: 433 MTEPPLNTPENREYLAEIMFESFNVQAFTLLYKPFLLWLRHG 558
+TEPPLN +NRE + E+MFE++ + + + L G
Sbjct: 109 LTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQG 150
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGD 235
V D GTG+ K G+AG+ P I PS + I+ + KVGD
Sbjct: 10 VCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+AVQAV+AL AS ++ TG V D GDGV+H VPV +GY + + I +AGR
Sbjct: 2177 MYVAVQAVMALYASGRT--------TGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGR 2228
Query: 693 NITSFIQSLLRER 731
++T ++Q L+ ER
Sbjct: 2229 DLTHYLQRLVTER 2241
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1
Query: 391 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 507
F LR ED L+TE PLN NRE + ++MFESFNV
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNV 2174
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +1
Query: 328 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 507
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 508 QAFTLLYKPFLLWLRHG 558
AF L L +G
Sbjct: 63 PAFFLCKNSVLTAFANG 79
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 591 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVG-IPPEQV 758
G+V+DSG T VPV +GYV+ I P+AG IT+ + + E V IPP V
Sbjct: 83 GLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEETNVEVIPPYMV 139
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 58.0 bits (134), Expect = 8e-09
Identities = 29/72 (40%), Positives = 50/72 (69%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
L+I++QAVL+L A+ ++ TG+V+D+GDGV+H VP+ EG+ + I IAGR
Sbjct: 158 LFISMQAVLSLYATGRT--------TGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGR 209
Query: 693 NITSFIQSLLRE 728
+++ +++ LLR+
Sbjct: 210 DVSRYLRLLLRK 221
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 421 HHFLMTEPPLNTPENREYLAEIMFESFNVQA 513
H L+TE PLN NRE AE+ FE+FNV A
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPA 157
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 587 HWHRSRQRR-WRYSH-CSSCR-RICYWIMYKTHPYCW*KHYFIY 709
H H++R R +R+ H C C R CY Y+ H YCW +H++ Y
Sbjct: 7 HRHQNRHNRCYRHHHYCCYCHHRYCY---YRHHHYCWYRHHYHY 47
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 119 ACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
A V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
>SB_42786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 31.9 bits (69), Expect = 0.60
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +1
Query: 199 NHSDKRNCKSWRSEYSEDDKAVEDLDFFIG--DEAFEATGYSVKY-PVRHGIVEDW-DLM 366
N +R SWR + ++ EDL D + A Y+V V G+ D DL+
Sbjct: 280 NPGSQRLRASWRQRFGRSERGTEDLGLSSASWDSSLHAYLYAVVLTSVTQGVTPDGVDLL 339
Query: 367 ERYIEQCVFKYLRAEPEDHHFLMT 438
E+Y+ + + L + H L T
Sbjct: 340 EKYVNRVSSQTLLFQTSHHKELTT 363
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 391 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVQAFTL 522
F L+ +P H +MT P + +E L EI+ F VQA L
Sbjct: 518 FLSLKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYL 561
>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
Length = 284
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 199 NHSDKRNCKSWRSEYSEDDKAV-ED-LDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMER 372
N +K N KS ED +++ ED +D+ DE+ VK + G + W+ + R
Sbjct: 4 NEKEKGNRKSLLDYRDEDQQSIGEDRVDYHNDDESTFINSREVK--LEKGKNQAWEDL-R 60
Query: 373 YIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 462
+ F + D + ++E PLN PE
Sbjct: 61 SVNAHTFDVKLFKEADESYPLSEKPLNAPE 90
>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
Length = 199
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 587 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 676
H H SR R+WR H + RRI W +Y H
Sbjct: 126 HDHNSRVRKWRVYH-NHNRRIRKWRVYHNH 154
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 587 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 676
H H SR R+WR + +C RI W +Y H
Sbjct: 100 HGHNSRIRKWRVYYNHNC-RIRKWRVYHDH 128
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 587 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 676
H H R R+WR H +C RI W +Y H
Sbjct: 139 HNHNRRIRKWRVYHNHNC-RIRKWRVYHDH 167
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 468 SVFWSVERRLGH*EMMIFGFRTEILKHALFDVPFH*IPVFYDTVAHRILYRVSCGFKSF 292
SVF +R+ I+ ++I H DVP +PVF D + R Y ++ G K +
Sbjct: 70 SVFRRPRKRVDSFSHAIYEAASKIFLHLKGDVPSSQLPVFDDDLERRRAYSMAFGAKRY 128
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 594 IVVDSGDGVTHIVPVAEGYVIGSCIK 671
+VVD+G THIVPV G VI ++
Sbjct: 359 LVVDTGYSFTHIVPVFNGKVIKKAVR 384
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTI 205
VIDVG+ K+GFAG+ P+ + P +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 327 SCAPRYRRRLGFNGKVHRTVRV*VSPCGTRRSSFLN 434
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 591 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPP 749
G+V+++GD V +VP+A V+G +PIAG ++ + L + +G+ P
Sbjct: 776 GVVLNAGDVVLGVVPIAGDVVLGV----VPIAG-DVVLGVVPLAGDVVLGVVP 823
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 184 VYYSINHSDKRNCKSWRSEYSEDDKAVEDLDFFIGDE 294
V+ + N KR C RSE+ ++K + D+ F +G E
Sbjct: 2734 VFTADNWQTKRRCIRERSEFLFNNKLLSDVSFRVGKE 2770
>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 506 CRPLHCCTSRSCFGCVMEVTYVC*THLHWHRSRQRRWRYSH-CSSCRRIC 652
C+P H CT+R C +E C T H+ R +H C C C
Sbjct: 41 CKPCHICTTRVKKNCTVESDTQC-TDDCKHKPRTYYENSTHDCQPCSYCC 89
>SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 383
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 454 TPENREYLAEIMFESFNVQAFTLLYKPFLLWLRHGSHVRLLN 579
T E R+ L + F F + F K FL W+ G H+R+++
Sbjct: 203 TDEERQKLVDDHF-LFRSRVFINKAKTFLNWINEGDHLRIIS 243
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/79 (25%), Positives = 31/79 (39%)
Frame = +1
Query: 193 SINHSDKRNCKSWRSEYSEDDKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMER 372
+ H D+ + E S + D F + E + S+ R G++E W +M
Sbjct: 462 NFKHKDEPSSPGITIETSPKGEEPSHEDVFSTSDN-ETSSDSIPRSPRRGMLEFWLVMRI 520
Query: 373 YIEQCVFKYLRAEPEDHHF 429
Y Q + R ED HF
Sbjct: 521 YDNQVDIYFHRRNSEDWHF 539
>SB_29969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 175 GTTVYYSINHSDKRNCKSWRSEYSEDDKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVED 354
GT YYS +H+DK + S ++S +D+ ++ LD K+P+R I +
Sbjct: 71 GTKNYYSQSHADKFSVLSIH-DHSNNDRTLKPLD-------------QDKWPLRERITKQ 116
Query: 355 WDLME 369
W L++
Sbjct: 117 WTLLD 121
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 524 CTSRSCFGCVMEVTYVC*THLHWHRSRQRRWRYSHCSSCRRI 649
C S F V+E Y+C HW +R +H C R+
Sbjct: 2549 CNSGYGFSTVVEKMYMCSVSDHWIHARMSVDGLAHFPDCSRV 2590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,084,338
Number of Sequences: 59808
Number of extensions: 515277
Number of successful extensions: 1389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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