Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00479
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 122 2e-28
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 86 2e-17
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 85 5e-17
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 84 1e-16
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 84 1e-16
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 83 2e-16
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 83 2e-16
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 83 2e-16
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 82 5e-16
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 82 5e-16
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 82 5e-16
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 75 4e-14
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 74 9e-14
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 71 1e-12
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 67 1e-11
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 51 1e-06
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 50 2e-06
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 46 4e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 39 0.003
At3g45800.1 68416.m04957 hypothetical protein 31 1.1
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 30 2.0
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 30 2.0
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont... 30 2.0
At2g17470.1 68415.m02017 expressed protein contains Pfam profile... 29 2.6
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 29 3.4
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 29 3.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 28 6.0
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 28 7.9
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 28 7.9
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 122 bits (295), Expect = 2e-28
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 4/108 (3%)
Frame = +1
Query: 196 INHSDKRNCKSWRSEYSEDDKAVEDLDFFIGDEAF----EATGYSVKYPVRHGIVEDWDL 363
+N S + +W+++++ A DLDF+IGDEA ++ +++ YP+ HG VEDWD
Sbjct: 43 LNQSKSSSKATWQTQHNAGVAA--DLDFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDA 100
Query: 364 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 507
MERY +QC+F YLR +PEDH+FL+TE PL PE+REY EI+FE+FNV
Sbjct: 101 MERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFETFNV 148
Score = 111 bits (266), Expect = 7e-25
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +3
Query: 510 GLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAG 689
GLYIAV +VLALAA + T+++ TG+VVD GDG TH+VPVAEGYVIGSCIK IPIAG
Sbjct: 150 GLYIAVNSVLALAAGY---TTSKCEMTGVVVDVGDGATHVVPVAEGYVIGSCIKSIPIAG 206
Query: 690 RNITSFIQSLLREREVGIPPE 752
+++T FIQ L+RER IPPE
Sbjct: 207 KDVTLFIQQLMRERGENIPPE 227
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 116 PACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET 220
PA VID GTGYTK+GFAGN EP FI+P+ +A+ E+
Sbjct: 7 PAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNES 41
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +1
Query: 262 VEDLDFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMT 438
+++ D F+GDEA G S+KYP+ HG+V +WD ME+ + LR EPE+H L+T
Sbjct: 50 MDEKDTFVGDEAQARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLT 109
Query: 439 EPPLNTPENREYLAEIMFESFNVQAFTLLY 528
E PLN NRE + +IMFESF AF +Y
Sbjct: 110 EAPLNPKVNREKMTQIMFESF---AFPSMY 136
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/73 (42%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+YI +QAVL+L +S ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 135 MYIGIQAVLSLYSSGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 186
Query: 693 NITSFIQSLLRER 731
++T ++ ++ ER
Sbjct: 187 DLTEYLTKIMMER 199
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 101 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
+GD A V D GTG K GFAG+ P+ + PS +
Sbjct: 4 LGDESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVV 38
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 85.0 bits (201), Expect = 5e-17
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FNV A
Sbjct: 113 NPKANREKMTQIMFETFNVPA 133
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T + +L ER
Sbjct: 186 DLTDSLMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNAPA 133
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T + +L ER
Sbjct: 186 DLTDALMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNAPA 133
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T + +L ER
Sbjct: 186 DLTDALMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNTPA 133
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T + +L ER
Sbjct: 186 DLTDHLMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNTPA 133
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T + +L ER
Sbjct: 186 DLTDHLMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNTPA 133
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/73 (45%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EGY + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 186 DLTDYLMKILTER 198
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
G+ + V D GTG K GFAG+ P+ + PS +
Sbjct: 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV 37
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNSPA 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EG+ + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 186 DLTDYLMKILTER 198
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + V D GTG K GFAG+ P+ + PS +
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVV 37
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNSPA 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EG+ + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 186 DLTDYLMKILTER 198
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + V D GTG K GFAG+ P+ + PS +
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVV 37
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PL
Sbjct: 53 DAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
Query: 451 NTPENREYLAEIMFESFNVQA 513
N NRE + +IMFE+FN A
Sbjct: 113 NPKANREKMTQIMFETFNSPA 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ EG+ + I + +AGR
Sbjct: 134 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGR 185
Query: 693 NITSFIQSLLRER 731
++T ++ +L ER
Sbjct: 186 DLTDYLMKILTER 198
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D + V D GTG K GFAG+ P+ + PS +
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVV 37
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 450
D F+GD+A +G ++ YP+ HG+V +WD ME+ + LR PE+H L+TE PL
Sbjct: 8 DLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPL 67
Query: 451 NTPENREYLAEIMFESFNV 507
N +RE + +IMFE+F V
Sbjct: 68 NPKADREKMTQIMFETFAV 86
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+YI +QA L+L AS ++ TG V+DSGDGV++IVP+ EG + I + +AGR
Sbjct: 89 MYIGMQAALSLHASGRT--------TGTVLDSGDGVSYIVPIYEGSALPHAILRLDLAGR 140
Query: 693 NITSFIQSLLRER 731
++T+++ ++ ER
Sbjct: 141 HLTNYLMKIMMER 153
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 74.1 bits (174), Expect = 9e-14
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +1
Query: 205 SDKRNCKSWRSEYSEDDKAVEDLDFFIGDEA--FEATGYSVKYPVRHGIVEDWDLMERYI 378
S K N S S+ +E +K ++G +A + V P++ GIV DWDL++
Sbjct: 52 STKTNSNSEDSK-TESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIW 110
Query: 379 EQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVQAFTLLYKPFL 540
E L +P +H L+ EPPLNT + RE AE+MFE + V A + P L
Sbjct: 111 EHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVL 164
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 588 TGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQVWNC 767
T +VVD G G T I PV +GYV+ + P+ G +T + L + + I P +
Sbjct: 173 TSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKR 232
Query: 768 KAI 776
K +
Sbjct: 233 KEV 235
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGD 235
GD + A V+D+G+ K G+AG P+ + PS I + + D
Sbjct: 4 GDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMD 47
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 280 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 456
++G+E ++K P+ HGIV +WD ME+ + LR +PE+H L+TE P N
Sbjct: 44 YVGEEGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNP 103
Query: 457 PENREYLAEIMFESFNVQA 513
NRE + +IMFESF+V A
Sbjct: 104 KANREKMTQIMFESFDVPA 122
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/73 (34%), Positives = 46/73 (63%)
Frame = +3
Query: 513 LYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGR 692
+Y+++Q+VL L +S ++ TG+V+D G+ V+H VPV EGY + I + + GR
Sbjct: 123 MYVSMQSVLYLYSSGRT--------TGVVLDLGERVSHTVPVYEGYALPHGILRLDLGGR 174
Query: 693 NITSFIQSLLRER 731
++T ++ ++ ER
Sbjct: 175 DLTDYLIEIMTER 187
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 241 YSEDDKAVEDLDFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPE 417
Y E + D +G+ E + YPV +GIV++WD ME + + L+ P
Sbjct: 41 YEESLMEQQVKDIVVGETCSELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPS 100
Query: 418 DHHFLMTEPPLNTPENREYLAEIMFESFN 504
D L+T+PPLN +NRE + E MFE +N
Sbjct: 101 DCKILLTDPPLNPSKNREKMIETMFEKYN 129
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/75 (45%), Positives = 48/75 (64%)
Frame = +3
Query: 507 AGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIA 686
AG++I +QAVL L A + TG+V+DSGDGVTH+VPV +GY K + +A
Sbjct: 131 AGVFIQIQAVLTLYA--------QGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA 182
Query: 687 GRNITSFIQSLLRER 731
GR+IT+++ LL R
Sbjct: 183 GRHITAYLVDLLSRR 197
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 107 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
D+ V D GTGY K GFAG P + P +
Sbjct: 2 DNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVV 34
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +1
Query: 199 NHSDKRNCKSWRSEYSEDDKAVEDLDFFIGDEA--FEATGYSVKYPVRHGIVEDWDLMER 372
N D + + + E DK + G +A F + P + GIV DWD+++
Sbjct: 43 NGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDN 102
Query: 373 YIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRE 471
+ L +P +H L+ EPPLN+ + RE
Sbjct: 103 VWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQRE 135
Score = 34.3 bits (75), Expect = 0.091
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 104 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTI 205
GD + A V+D+G+ K G+AG P+ + PS +
Sbjct: 4 GDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVV 37
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 328 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPEN-REYLAEIMFESFN 504
P+ G++ DWD ME + V+ L E + ++ PL TP+ RE L ++MFE+FN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 505 VQAF 516
V F
Sbjct: 117 VSGF 120
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 507 AGLYIA-VQAVLAL-AASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIP 680
+ LYIA Q+++ L AS + + +T +VVD G TH VPV + + IK I
Sbjct: 124 SSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRID 183
Query: 681 IAGRNITSFIQSLLREREVGIPPE 752
+ G+ T++++ L+ R + + E
Sbjct: 184 LGGKAFTNYLKELVSYRSINVMDE 207
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/93 (24%), Positives = 39/93 (41%)
Frame = +1
Query: 283 IGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 462
+ DE + T +V+ P+ G + + DL L P L+TE PL+ P
Sbjct: 50 LSDE-IDLTSAAVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPS 108
Query: 463 NREYLAEIMFESFNVQAFTLLYKPFLLWLRHGS 561
+ E++FE F + + + L+ L S
Sbjct: 109 VQRTTDELVFEDFGFSSLYIAHPQSLVHLYEAS 141
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 298 FEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPE--DHHFLMTEPPLNTPENRE 471
F+ T + P +V +++ME YI F L A DH L+TE N ++R
Sbjct: 75 FDCTRSGPRSPFDSNVVYQFEIME-YILDYAFDRLGANGSGIDHPILITECACNPVQSRS 133
Query: 472 YLAEIMFESFNVQA 513
+AE++FE++ V A
Sbjct: 134 KMAELLFETYGVPA 147
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 591 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNITSFIQSLL 722
GIV+ G TH +P +G I I G ++T +++ LL
Sbjct: 171 GIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLL 214
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 125 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQST 244
VID G Y ++G+AG EP+ + + + G+ T
Sbjct: 23 VIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVT 62
>At3g45800.1 68416.m04957 hypothetical protein
Length = 563
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Frame = +1
Query: 331 VRHGIVEDWDLMERYIEQCVFKYLRAEP-----ED-----HHFLMTEPPLNTPENREYLA 480
+ H + E D ++ IE C++KY+ E ED HH +T E+ E+
Sbjct: 114 ISHNVSETIDKVKNLIETCIYKYMSLEETVTYLEDNHNISHHLTITIWEQLQKESPEFFK 173
Query: 481 E------IMFESFNVQAFTLLYKPFLLWLRHGSH--VRLLNAPS 588
+ +M E+ ++ T +K FL G+H V+L N PS
Sbjct: 174 KYYFHFSLMVENGDLDIGTAPFKNFLGQDPEGAHLLVKLANTPS 217
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 525 VQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSC-IKHIPIAGRNIT 701
V AV A+ + + +A RT +GIVV+ G V I+P+ G V+ ++ I +T
Sbjct: 231 VPAVCAVNQAVLALYAARRT-SGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLT 289
Query: 702 SFIQSLLREREV 737
F++ ++E +
Sbjct: 290 GFLKEKMQENNI 301
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 525 VQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSC-IKHIPIAGRNIT 701
V AV A+ + + +A RT +GIVV+ G V I+P+ G V+ ++ I +T
Sbjct: 231 VPAVCAVNQAVLALYAARRT-SGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLT 289
Query: 702 SFIQSLLREREV 737
F++ ++E +
Sbjct: 290 GFLKEKMQENNI 301
>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
contains similarity to SKP1 interacting partner 3
GI:10716951 from [Arabidopsis thaliana]
Length = 284
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 686 SNRDVFYT*SNNISFCNWNNVSNA 615
S RD+ T S++ S+C+W+NVS++
Sbjct: 100 SARDISITYSDHASYCSWSNVSDS 123
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 538
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 297 SFITDEKIQIFDSLIILRVL*SPTFAVSFIAMVDGIINCGSLLPAKPSLVYPVPTSIT-Q 121
S + + ++++S L + + + F+A ++ ++N L K PVP ++ Q
Sbjct: 459 SVVNETVYKVYESASSLSLATFASLLIEFVARLENLVNAFEELSTKADFRDPVPLNVVDQ 518
Query: 120 AGKWSPI 100
G W+ +
Sbjct: 519 EGLWTTL 525
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 533 RSCFGCVMEVTYVC*THLHWHRSRQRRWRYSHCSSCRRICYWIMY 667
+ C C +E++Y T H + ++R+ HC CR+ +++Y
Sbjct: 143 KECVECPLEISYPTHTK-HSLQLFYSKYRFDHCIYCRKRATYMIY 186
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 533 RSCFGCVMEVTYVC*THLHWHRSRQRRWRYSHCSSCRRICYWIMY 667
+ C C +E++Y T H + ++R+ HC CR+ +++Y
Sbjct: 143 KECVECPLEISYPTHTK-HSLQLFYSKYRFDHCIYCRKRATYMIY 186
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +1
Query: 229 WRSEYSEDDKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRA 408
W S + K +ED+D FI + F+ G + R + + ++ + + F +
Sbjct: 649 WYSVVPKTKKCLEDIDKFIKENHFDECGI-IYCLSRMDCEKVSERLQEFGHKAAFYHGSM 707
Query: 409 EPEDHHFLMTE 441
EPE F+ T+
Sbjct: 708 EPEQRAFIQTQ 718
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 277 NPNLRQPYHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSI 146
N N Y PP ++A+ + +G WN W L + TQF +
Sbjct: 238 NINSSNGYAPPEVVMASASTPISTFGTWNFS-WLLPSSTTQFYV 280
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +1
Query: 337 HGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVQAF 516
H I D+D ++ ++ QC + A + M + + I +E NVQA
Sbjct: 246 HVIQNDYDSLDVHVGQCFSVLVTANQAAKDYYMVASTRFLKKELSTVGVIRYEGSNVQAS 305
Query: 517 TLLYKPFLLW 546
T L K + W
Sbjct: 306 TELPKAPVGW 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,252
Number of Sequences: 28952
Number of extensions: 358580
Number of successful extensions: 1090
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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