Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00478
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    26   4.8  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.8  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.4  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 64  NKPVYHYVKLPE 99
           +KPV HY+KLPE
Sbjct: 116 HKPVLHYIKLPE 127


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 37  DRPNSFVAVNKPVYHYVKLPEKEMSFLKQNAS 132
           D PN       P Y +V LP++E   LK+ AS
Sbjct: 198 DSPNKLPKQKHPAYSFVTLPKRE-EILKRPAS 228


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 124 NASTI-NTYWFIDCVLYDNTIDFSFNYTYGDVMSSHHVEAIVVAKINQY 267
           N S+I N  W  +  +Y     F +NYT G  +   H+E ++   ++ Y
Sbjct: 294 NCSSITNEQWSYNVGVYLAGTAFLYNYTNGSSVWQTHMEGLMNKALDYY 342


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 628 INCCYRLSNTDYLFKSPDCVIFTDSNRIIAFVYCWRFL*SLFEIPLFLIL*TSVEFLITV 449
           IN C  L+N  Y F    C I    + I+   Y +  L  + + P FL    S  F I  
Sbjct: 191 INNCVGLNNARYFFLFLLCTIQLLFHSILRLGYHFNALRDMRQYPSFL---RSWWFAIKS 247

Query: 448 AGE-GSVAAVDPCLIVFVL 395
            GE GSV  +     V VL
Sbjct: 248 EGELGSVFLISLICSVLVL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,221
Number of Sequences: 5004
Number of extensions: 44900
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)