Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00478
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762...    31   1.2  
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771...    29   2.9  
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386...    29   5.0  
11_01_0788 + 6599962-6602700                                           28   6.6  
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    28   8.8  
02_02_0344 + 9182775-9183539,9195912-9196028                           28   8.8  

>06_01_0982 +
           7627420-7628141,7628190-7628643,7629167-7629823,
           7629975-7630469
          Length = 775

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 64  NKPVYHYVKLPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDV--MSSHHV 234
           N+P  H++ + +K+ S      +  +T   I  +  D+T DF   YT GD   + +H+V
Sbjct: 16  NEPPVHHLLVDDKDKSETYFPINPTDTSMEIPAINLDDTFDFETMYTAGDAGSLQAHNV 74


>02_05_1227 -
           35076047-35076217,35076737-35076797,35077038-35077123,
           35077213-35077301,35077685-35077766,35078094-35078136,
           35078211-35078284,35078492-35078561,35078747-35078816,
           35079275-35079369,35079473-35079549,35080725-35080760
          Length = 317

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 726 TWYWTQ*SNGGDPAYVTLRSNKSPCCSQFRPLILTVVIGSLTLTIC 589
           ++ WTQ  +   P  V L+ N++  C Q+ P      +GS   ++C
Sbjct: 38  SYVWTQEGHDWVPTLVILKLNRAALCVQWSPKENKFAVGSGAKSVC 83


>02_04_0651 -
           24737953-24738114,24738205-24738375,24738534-24738632,
           24738738-24738938,24739234-24739341,24739531-24739810,
           24739962-24740089
          Length = 382

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  DRPNSFVAVNKPVYHYVK--LPEKEMSFLKQNASTINTYWFI 156
           DR    +   K VYH +K  +PE   S+LK ++  +   W +
Sbjct: 235 DRGVQVIMNEKEVYHMLKSQIPENRASYLKLSSDNVPQLWIV 276


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 587 EQIVSVREPITTVNISGRNWLQHGDLLDLKVTYAGSPPFDYCVQYQ 724
           E+I+ + + I         WLQ  DL+   +TY     F  C+  Q
Sbjct: 120 EEIIQIEKKIENAGKRKERWLQQPDLIPNPLTYIERKQFQDCLLAQ 165


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 148 WFIDCVLYDNTIDFSFNYTYGDV--MSSHHV 234
           W I  +  D T DF   YT GDV  + +H+V
Sbjct: 32  WMIPAINLDYTFDFETMYTSGDVGSLQAHNV 62


>02_02_0344 + 9182775-9183539,9195912-9196028
          Length = 293

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 64  NKPVYHYVKLPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDV--MSSHHV 234
           N+P  H++ + +++ +      +  +T   I  +  D+T DF   YT GD   + +H+V
Sbjct: 16  NEPPVHHLLVDDEDRNETYFPINLTDTSMEIPAINLDDTFDFETMYTTGDAGSLQAHNV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,406
Number of Sequences: 37544
Number of extensions: 255990
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)