Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00478
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    29   4.5  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   4.5  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   4.5  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   4.5  
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kina...    28   5.9  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    28   5.9  
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    28   5.9  

>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46  NSFVAVNKPVYHYVK-LPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDVM 219
           +SF    +P+ H    LP +  S +   + T  T W ID V + N +  + + T G+VM
Sbjct: 670 SSFPRKLRPLTHLTTVLPTRLASDISLTSPTSETSWSIDDVGFSNLLILNEDATTGEVM 728


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46   NSFVAVNKPVYHYVK-LPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDVM 219
            +SF    +P+ H    LP +  S +   + T  T W ID V + N +  + + T G+VM
Sbjct: 2341 SSFPRKLRPLTHLTTVLPTRLASDISLTSPTSETSWSIDDVGFSNLLILNEDATTGEVM 2399


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46   NSFVAVNKPVYHYVK-LPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDVM 219
            +SF    +P+ H    LP +  S +   + T  T W ID V + N +  + + T G+VM
Sbjct: 2283 SSFPRKLRPLTHLTTVLPTRLASDISLTSPTSETSWSIDDVGFSNLLILNEDATTGEVM 2341


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46   NSFVAVNKPVYHYVK-LPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTYGDVM 219
            +SF    +P+ H    LP +  S +   + T  T W ID V + N +  + + T G+VM
Sbjct: 2465 SSFPRKLRPLTHLTTVLPTRLASDISLTSPTSETSWSIDDVGFSNLLILNEDATTGEVM 2523


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  HYVKLPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTY 207
           HY+     E   +K+    IN  W  D +LY N++D  F+ T+
Sbjct: 84  HYLTWDPSEFGNIKEVRLPINNIWKPDVLLY-NSVDQQFDSTW 125


>U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoformb protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 417 GSTAATEPSPATVIKNSTEVHKIKKRGISNRLQRKRQQY-TNAIIRLLSVKITQSGD 584
           G T+   P P++ +   T    + +R + +     RQQ  T  + RL+  +  Q  D
Sbjct: 3   GDTSDDSPGPSSTVSTMTTTGTVDRRSLLSAASMVRQQSDTTGVRRLVRARAVQEDD 59


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  HYVKLPEKEMSFLKQNASTINTYWFIDCVLYDNTIDFSFNYTY 207
           HY+     E   +K+    IN  W  D +LY N++D  F+ T+
Sbjct: 84  HYLTWDPSEFGNIKEVRLPINNIWKPDVLLY-NSVDQQFDSTW 125


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 605 REPITTVNISGRNWLQHGDLLDLKVTYAGSPPFDYCVQYQ 724
           R  +TTV+ +G   ++ GD+LD K +  G+P       YQ
Sbjct: 676 RGALTTVSNTGLIMIEEGDILDEKSSSEGAPTLMLTPTYQ 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,292
Number of Sequences: 27780
Number of extensions: 249609
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)