Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00477
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 37 0.002
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 36 0.004
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 36 0.006
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 36 0.007
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 35 0.013
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 32 0.068
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 32 0.090
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.12
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 30 0.28
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 30 0.36
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 29 0.64
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 1.1
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 28 1.5
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 2.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 5.9
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 7.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 7.9
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 7.9
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKK 146
RRH H +K + C C + F S L HV+ +H++K
Sbjct: 44 RRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQK 82
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = +3
Query: 15 FYNNRR--RHMFIHTGLKPYKC--DTCLKCFTTSGELRAHVE--HVHMKKPWP 155
FY + RH+ +H KPY C + C +CF+ +LR+H+ H H+ P+P
Sbjct: 94 FYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHL-LPYP 145
Score = 32.3 bits (70), Expect = 0.068
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 12 AFY--NNRRRHMFIHTGLKPYKC--DTCLKCFTTSGELRAHVEHVHMK-KPW 152
AFY ++ + H HT +KP+ C D C F T L H+E VH K KP+
Sbjct: 63 AFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIE-VHRKPKPY 113
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKK 146
RRH HT K + C C FT S L HV H+K+
Sbjct: 35 RRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQ 73
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 33 RHMFIHTGLKPYKCD--TCLKCFTTSGELRAHVEHVHMKK 146
RH+ HTG KP++C +C K FT EL HV H++K
Sbjct: 21 RHIRSHTGEKPFECSYPSCKKRFTRRDELIRHV-RTHLRK 59
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 24 NRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
N + HM HT +P++C C K F + R H E +H
Sbjct: 586 NLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH-EQLH 622
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 21 NNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
+++RRH +HTG+K + C TC + F L H
Sbjct: 613 HDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.068
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 12 AFYN--NRRRHMFIHTGLKPYKC--DTCLKCFTTSGELRAH 122
AFY ++ RH+ HTG KP+ C C K F+ S EL H
Sbjct: 34 AFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 31.9 bits (69), Expect = 0.090
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 6 RVAFYNNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKPW 152
R+A N H+ H +PY+CD C F +L+ H+ +P+
Sbjct: 453 RIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPY 501
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 18 YNNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
+++ +RH+ IH +PY C+ CLK F L H
Sbjct: 485 HHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 36 HMFIHTGLKPYKCDT--CLKCFTTSGELRAHVEHVH 137
H+ HTG KP+ C C + FT S L H+ VH
Sbjct: 96 HLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 36 HMFIHTGLKPYKCD--TCLKCFTTSGELRAHVEHVH 137
H + HTG +P+ CD C K F +R H + +H
Sbjct: 486 HTYSHTGERPFVCDYAGCGKAFNVRSNMRRH-QRIH 520
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.9 bits (64), Expect = 0.36
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 60 KPYKCDTCLKCFTTSGELRAHVEHVHMK 143
KPY+C+ C K + L+ H H H++
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSHLQ 424
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 NNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH-MKKPW 152
+NR+ + G K + C C K F S LR H+ +H +KP+
Sbjct: 408 SNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPF 452
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 394 VFLCRNFVFLVLECSFFFLILVQLMHKPFELYQDSIISSELITYRNA 534
V LC+ + ++L C L L F LY+D I +I+Y NA
Sbjct: 262 VDLCK--ILIILTCMLEELSLNDRFQPAFPLYEDPAIQKFIISYLNA 306
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 57 LKPYKCDTCLKCFTTSGELRAHVEHVHMKKPW 152
+K Y C+TC + F L+ H+ +KP+
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNEKPF 98
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKCDT-------CLKCFTTSGELRAHVEHVHMKKPWPKRAR 167
+RH+ HT KP+ C C + F+ L H + +H + P P+R R
Sbjct: 86 KRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH-RNPQPRRRR 137
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 362 FRDMLAFKQFPNKNIWKIFSSSLFTHTHYI 273
++++LAF F +NI +FSSS H I
Sbjct: 428 YKELLAFAPFVVQNIIIVFSSSFIEEEHVI 457
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 91 HLRHVSHLYGFRPVWMNIWRL 29
++RH+ HL FR +N +RL
Sbjct: 347 YIRHIEHLQVFRQAMVNYYRL 367
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 106 PDVVKHLRHVSHLYGFRPVWMNIWRLLLL 20
PD V HL ++ + Y F ++ W L L+
Sbjct: 492 PDGVIHLYYIGYFYSFMTAFLIYWGLNLV 520
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 139 ICTCSTCARSSPDVVKHLRHVSHL-YGFRP 53
+ C C + D+ KHL+H SHL + F P
Sbjct: 1066 VSNCKKCFSNYEDMFKHLQH-SHLPFKFTP 1094
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -1
Query: 495 ILIQFERLVHELHQYKKKKRTF*NQEHKVSTQKHSPSYNNTPTIFSRY 352
+L F L + L + + R HK+ T +++ +N P +F+R+
Sbjct: 5 LLAYFAVLSNILSSVEGRVRYSKRPNHKLGTAEYAECMSNAPIVFNRF 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,652
Number of Sequences: 5004
Number of extensions: 47640
Number of successful extensions: 165
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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