Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00477
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0477 - 6221990-6223224,6227722-6228817 30 1.5
01_05_0421 + 21990034-21990392,21991691-21992681 30 1.5
09_04_0564 + 18565583-18566449,18569662-18570123 30 2.0
08_02_1172 + 24898290-24899141,24900864-24901328 30 2.0
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 30 2.0
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670... 30 2.0
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 2.6
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 2.6
01_06_1412 - 37140654-37141088,37141549-37142214 29 2.6
06_03_0743 + 24069752-24070483,24071890-24072345 29 3.5
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 29 3.5
02_05_1277 - 35408097-35409080 29 3.5
02_03_0177 - 16017650-16019599 29 4.6
05_05_0022 + 21592403-21593083,21593720-21594208 28 6.1
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 28 6.1
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886... 28 8.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.1
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 72 CDTCLKCFTTSGELRAHVEHVHMKKPWPKR 161
C + CF T G+L A +EH K PKR
Sbjct: 345 CGQSVLCFDTDGKLLARLEHDERKSQRPKR 374
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
++H F G K +KCD C K + + +AH
Sbjct: 71 KKHFFRKHGEKKWKCDKCSKKYAVHSDWKAH 101
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 54 GLKPYKCDTCLKCFTTSGELRAH 122
GLKP+ C C K F G+ R H
Sbjct: 353 GLKPFLCRKCGKAFAVKGDWRTH 375
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 54 GLKPYKCDTCLKCFTTSGELRAH 122
GLKP+ C C K F G+ R H
Sbjct: 348 GLKPFLCRKCGKAFAVKGDWRTH 370
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKC--DTCLKCFTTSGELRAHVE 128
+RH IHTG K + C C K F+ LR+H++
Sbjct: 134 KRHHLIHTGQKDFICPHPGCGKAFSLDFNLRSHLK 168
>03_02_0928 +
12464325-12464498,12466494-12466679,12466929-12467021,
12467212-12467394,12467506-12467608,12467695-12467865,
12468086-12469084,12469178-12469254,12469485-12470337,
12470878-12471000,12471526-12471878
Length = 1104
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 36 HMFIHTGLK--PYKCDTCLKCFTTSGE--LRAHVEHVHMKK 146
H +I T K Y CDTCL+C E + H +H K
Sbjct: 721 HEYISTAKKISSYNCDTCLECVKPESEAMIPRHYKHARSSK 761
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 27 RRRHMFIHTGLKPYKC 74
R HM +HTG++PY+C
Sbjct: 1300 RTEHMRVHTGVRPYEC 1315
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 48 HTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
H K +KC C K +T+G + HV VH
Sbjct: 29 HQKAKHFKCHVCHKKLSTAGGMAIHVLQVH 58
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 54 GLKPYKCDTCLKCFTTSGELRAH 122
G KP++C C K F G+ R H
Sbjct: 286 GAKPFRCRRCAKPFAVKGDWRTH 308
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 54 GLKPYKCDTCLKCFTTSGELRAH 122
G+KP+ C C K F G+ R H
Sbjct: 308 GIKPFMCRKCGKAFAVRGDWRTH 330
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +3
Query: 24 NRRRHMFIHTGLKPYKCDT--CLKCFTTSGELRAH 122
+R H +H G +PYKC T C K + + H
Sbjct: 609 DRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRH 643
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKC--DTCLKCFTTSGELRAHVEHVHMKKPW 152
RRH IH PYKC + C F S + H + K+P+
Sbjct: 581 RRHQSIHNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPY 623
>02_05_1277 - 35408097-35409080
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 45 IHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKP 149
+ G Y+C TC KCF T L H KKP
Sbjct: 110 VRAGFYVYECKTCNKCFPTFQALGGH--RASHKKP 142
>02_03_0177 - 16017650-16019599
Length = 649
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 420 EHKVSTQKHSPSYNNTPTIFSRYACI*TISEQEYLEDFL 304
+ + + P+Y +TP IF+ A I SEQ L+D L
Sbjct: 548 DRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 54 GLKPYKCDTCLKCFTTSGELRAH 122
G KP+ C C K F G+ R H
Sbjct: 294 GAKPFACRRCAKPFAVKGDWRTH 316
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 24 NRRRHMFIHTGLKPYKCD--TCLKCFTTSGELRAHVEHVHMKKPW--PKRARTNRQSDAL 191
N + HM H+ + C C + FT +LRAH++ H K P + TNR L
Sbjct: 120 NLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEKGGLQNPGGSATNR--SGL 177
Query: 192 AD 197
AD
Sbjct: 178 AD 179
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKC--DTCLK--CFTTSGELRAH-----VEHVHMKKPWPKRARTNRQS 182
+RH IHTG K + C + C K F+ L+AH V++ H+ K +P+ AR Q
Sbjct: 90 KRHFLIHTGEKNFVCPHEGCGKVLAFSLDFNLKAHMKTHSVDNYHVCK-YPECARRFTQE 148
Query: 183 DAL 191
L
Sbjct: 149 SKL 151
>12_02_0884 -
23986393-23987486,23988213-23988314,23988561-23988642,
23989231-23989368
Length = 471
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 69 KCDTCLKCFTTSGELRAHV 125
+C C K F+TSG LR H+
Sbjct: 179 QCQMCSKVFSTSGSLREHM 197
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 30 RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVE 128
++H G K +KCD C K + + +AH +
Sbjct: 112 KKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHTK 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,453
Number of Sequences: 37544
Number of extensions: 269685
Number of successful extensions: 674
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -