Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00477
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    48   3e-07
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    26   0.98 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   1.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   2.3  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   9.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 48.0 bits (109), Expect = 3e-07
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
           + H+  HTG KP++C  C  CFTTSGEL  H+ + H
Sbjct: 171 QNHVNTHTGTKPHRCKHCDNCFTTSGELIRHIRYRH 206



 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 19/30 (63%), Positives = 20/30 (66%)
 Frame = +3

Query: 33  RHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           RHM IHTG KPY CD C   FT S  L+AH
Sbjct: 257 RHMRIHTGEKPYSCDVCFARFTQSNSLKAH 286



 Score = 40.3 bits (90), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 36  HMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
           H+ +HT  KPYKCD C + F     L+ H+ + H
Sbjct: 373 HLLLHTDQKPYKCDQCAQTFRQKQLLKRHMNYYH 406



 Score = 30.3 bits (65), Expect = 0.060
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 33  RHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKP 149
           RH+  H+  +P+KC  C + F T   L+ HV      KP
Sbjct: 144 RHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTGTKP 182



 Score = 30.3 bits (65), Expect = 0.060
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKPW 152
           +RH+  HTG KP++C  C        +L  H+     +KP+
Sbjct: 228 KRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPY 268



 Score = 29.5 bits (63), Expect = 0.11
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 3   ARVAFYNNRRRHMFIH-TGLKP-YKCDTCLKCFTTSGELRAHVEHVH 137
           AR    N+ + H  IH  G KP ++C  C        +LR HV+++H
Sbjct: 275 ARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLRIHVQNLH 321



 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 33  RHM-FIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKPW 152
           RH+ + HT  +P+KC  C        +L+ H+     +KP+
Sbjct: 200 RHIRYRHTHERPHKCTECDYASVELSKLKRHIRTHTGEKPF 240



 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKPW--PKRARTNRQSDAL 191
           + H   H G K Y+C+ C     +   L +H+     +KP+   + A+T RQ   L
Sbjct: 343 KMHAKTHEGEKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQCAQTFRQKQLL 398



 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 45  IHTGLKPYKCDTCLKCFTTSGELRAHVE 128
           +HT  KP KC  C   F      + H +
Sbjct: 320 LHTADKPIKCKRCDSTFPDRYSYKMHAK 347


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
            gambiae T1 retroposon. ).
          Length = 975

 Score = 26.2 bits (55), Expect = 0.98
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 376  HTYDIFEICLHLNNFRTRIFGRFSL 302
            H Y +F+    LN+FR RIF   SL
Sbjct: 951  HFYYLFDFDSSLNSFRNRIFSSNSL 975


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
           R H  +H   + ++C  C   +T S  LR H +  H
Sbjct: 513 RNHYHVHFPGR-FECPLCRATYTRSDNLRTHCKFKH 547


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
            transcription factor FRU-MA protein.
          Length = 960

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 21   NNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVH 137
            +NR  H  IH   + ++C  C + FT    ++AH +  H
Sbjct: 909  SNRWHHANIHRP-QSHECPVCGQKFTRRDNMKAHCKVKH 946


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 85  RHVSHLYGFRPVWMNI 38
           RH++HLYG R    NI
Sbjct: 473 RHMAHLYGLRLTENNI 488


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,450
Number of Sequences: 2352
Number of extensions: 12968
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)