Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00477
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    31   0.55 
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    31   0.73 
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ...    30   1.7  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    29   2.2  
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    29   2.9  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    29   2.9  
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ...    29   2.9  
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ...    29   3.9  
At4g26030.1 68417.m03748 hypothetical protein                          28   5.1  
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ...    28   5.1  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    28   6.8  
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ...    28   6.8  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   6.8  
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ...    28   6.8  
At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein ...    27   8.9  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    27   8.9  
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ...    27   8.9  

>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMK 143
           R H   +    PY C  C   F TS +  AH+  +H K
Sbjct: 234 RTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMHYK 271


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKC--DTCLKCFTTSGELRAHVE 128
           +RH  IHTG + Y C  + C K F+    LR+H++
Sbjct: 126 KRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMK 160


>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 288

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 57  LKPYKCDTCLKCFTT----SGELRAHVEHVHMKKPWPKRARTNRQSD 185
           ++ YKC  C K F       G +R+H+ + H ++  P +     +SD
Sbjct: 1   MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQRPSQLSYETESD 47


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVE 128
           ++H F   G K +KC+ C K +    + +AH +
Sbjct: 157 KKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAK 189


>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 54  GLKPYKCDTCLKCFTTSGELRAH 122
           G+KP+ C  C K F   G+ R H
Sbjct: 297 GIKPFMCRKCGKAFAVRGDWRTH 319


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           ++H +   G K +KCD C K +    + +AH
Sbjct: 145 KKHYYRKHGEKKWKCDKCSKRYAVQSDWKAH 175


>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
           similar to zinc finger protein ID1 GB:AAC18941
           GI:3170601 from [Zea mays]  contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 467

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           ++H +   G K +KCD C K +    + +AH
Sbjct: 146 KKHYYRKHGEKKWKCDKCSKRYAVQSDWKAH 176


>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 300

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 12  AFYNNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHV 125
           A+  + R H   +T   PY C  C   F TS +  AH+
Sbjct: 225 AYQYDGRTHSLPYTKYGPYTCPRCNGVFDTSQKFAAHM 262


>At4g26030.1 68417.m03748 hypothetical protein 
          Length = 220

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 81  CLKC---FTTSGELRAHVEHVHMKKPWPKRARTNRQ 179
           CLKC   F TS  L  H E +H K    KR + + Q
Sbjct: 160 CLKCNSLFDTSQMLVVHTELIHSKNETKKRLKLHHQ 195


>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 329

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 18  YNNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHV 125
           +N+ R H   +    PY C  C   F TS +  AH+
Sbjct: 228 HNDGRTHSLPYEKYGPYTCPKCNGVFNTSQKFAAHM 263


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 18  YNNRRRHMFIHTGLKP---YKCDTCLKCFTTSGELR 116
           Y+++ R  + +   K    YKC  C +C+T  G LR
Sbjct: 27  YSDQTRFSYFNNNKKSQPRYKCKNCCRCWTHGGVLR 62


>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
           identical to WIP4 protein [Arabidopsis thaliana]
           gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 412

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 54  GLKPYKCDTCLKCFTTSGELRAH 122
           G++P+ C  C K F   G+ R H
Sbjct: 336 GVRPFACRRCGKAFAVKGDWRTH 358


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           ++H     G K +KCD C K +    + +AH
Sbjct: 164 KKHFCRKHGEKKWKCDKCSKKYAVQSDCKAH 194


>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
           identical to WIP5 protein [Arabidopsis thaliana]
           gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 54  GLKPYKCDTCLKCFTTSGELRAH 122
           G KP+ C  C K F   G+ R H
Sbjct: 258 GSKPFACRMCGKAFAVKGDWRTH 280


>At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 278

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 60  KPYKCDTCLKCFTTSGELRAHVEHVHMKKPWPKRAR 167
           K Y C  C K F+TS  L  H      ++ W K+ +
Sbjct: 78  KIYTCHFCKKGFSTSQALGGHQNAHKQEREWDKKRK 113


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           ++H     G K +KCD C K +    + +AH
Sbjct: 127 KKHFCRKHGEKKWKCDKCSKKYAVQSDWKAH 157


>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 516

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 30  RRHMFIHTGLKPYKCDTCLKCFTTSGELRAH 122
           ++H +   G K +KC+ C K +    + +AH
Sbjct: 147 KKHYYRKHGEKKWKCEKCSKRYAVQSDWKAH 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,889
Number of Sequences: 28952
Number of extensions: 235799
Number of successful extensions: 604
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)