Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00476
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    26   0.38 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   6.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 355 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRSKF 513
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S +
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKSPY 389


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 355 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRSKF 513
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S +
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKSPY 389


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 737 SLNFFLSETVRFGDNRYDVNFVVQLFHELNIKR 639
           S N+F ++T  F +  ++ +F++Q  H L+I R
Sbjct: 567 SSNYFANKTYDFHNMSFENDFIIQPKHLLSIAR 599


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 364 DATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKDF 543
           D     NQ      S ++ +   +K+ L+V       D+         K   +TSS+ +F
Sbjct: 72  DEENDINQGGLKRVSALKEKNPNLKVMLSVGGATASPDSFVAAANDPEKMKNMTSSAIEF 131

Query: 544 FET 552
           FET
Sbjct: 132 FET 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,894
Number of Sequences: 336
Number of extensions: 3200
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)