Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00476
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 92 7e-20
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 89 6e-19
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 88 1e-18
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 82 1e-16
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 80 3e-16
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 71 2e-13
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 67 2e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.14
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 30 0.31
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.31
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.42
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 29 0.73
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 29 0.96
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 28 1.7
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 2.9
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.9
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 5.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 5.1
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 9.0
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 92.3 bits (219), Expect = 7e-20
Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYP---ERVIPDATEKTNQTVKLDAST 411
++ ++GF F ++V+GESG GKSTLVN+L D+YP + + D TV +++S
Sbjct: 87 RRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFGVNPEPTVMINSSA 146
Query: 412 VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKDFFE 549
VEI E G+ L+L V+DTPG+GD IDNTDC++ + + E
Sbjct: 147 VEIVENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLE 192
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +3
Query: 519 IDEQFERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVI 698
I+ +++++L E R I D R+H C +FI P GH + +++ M LH KVNI+P+I
Sbjct: 183 IEGRYDQYLELEKHNPRSTIQDPRVHACIFFIQPTGHAISAMELRVMLALHEKVNIIPII 242
Query: 699 AKADCLTKKEVQRLKSRV 752
AKAD LT E+ K +
Sbjct: 243 AKADTLTDDELNFTKEMI 260
Score = 28.7 bits (61), Expect = 0.96
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 203 GYVGFANLPNQVH 241
GYVGFA+LPNQ H
Sbjct: 74 GYVGFASLPNQWH 86
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 89.0 bits (211), Expect = 6e-19
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +3
Query: 504 IQIQYIDEQFERFLRDESGLNRR-NIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKV 680
I +QYI+ Q++ L +ES + R D+R+H YFISP GHGL+ LDIE M++L +V
Sbjct: 134 IILQYIESQYDNVLEEESRIKRNARFCDDRVHALIYFISPTGHGLRELDIELMRRLAPRV 193
Query: 681 NIVPVIAKADCLTKKEVQRLKSRV 752
NI+P IAKAD LT +E+Q K +
Sbjct: 194 NIIPAIAKADSLTAQELQTTKEMI 217
Score = 58.8 bits (136), Expect = 8e-10
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +1
Query: 238 TQKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDL--YPERVIPDATEKTNQTVKLDAST 411
T+K KKG LMVVG+ GLG++ +N+L L + P + + T
Sbjct: 43 TKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQT 102
Query: 412 VEIEERGVKLRLTVVDTPGYGDAIDNTDCF 501
I E G K+ LTV+DTP +G+AIDN + F
Sbjct: 103 DIILEDGTKINLTVLDTPHFGEAIDNENNF 132
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 88.2 bits (209), Expect = 1e-18
Identities = 33/81 (40%), Positives = 59/81 (72%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIV 689
+++I++Q E ++R + +RR I+D RIH C YF+ P +G++P+D+E MK + +VN++
Sbjct: 111 VEFIEDQHESYMRQDQQPDRRKIIDMRIHACLYFLRPVRNGVRPMDLEAMKHISKRVNLI 170
Query: 690 PVIAKADCLTKKEVQRLKSRV 752
PVIAKAD T++++ K+R+
Sbjct: 171 PVIAKADMYTRRDLALYKTRI 191
Score = 82.2 bits (194), Expect = 7e-17
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Frame = +1
Query: 247 ICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLY----PERVIPDATEKTNQTVKLDASTV 414
+ + G FTLM+ GESGLGK+T N+LF T + PE+V EKT V+++ +
Sbjct: 22 VSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEKT---VEIEITKA 78
Query: 415 EIEERGVKLRLTVVDTPGYGDAIDNTDCFRS 507
E+EE+ LRLTV+DTPG+GD I+N+ C+ S
Sbjct: 79 ELEEKNFHLRLTVIDTPGFGDFINNSGCWES 109
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 81.8 bits (193), Expect = 1e-16
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNR-RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNI 686
I+YI +Q +LR E +R + + D R+HCC +FI P GH L+P+DI +K+L VN+
Sbjct: 114 IKYIRDQHSSYLRRELNSHREKRLQDTRVHCCLFFIRPTGHSLRPIDIAVLKRLTEVVNV 173
Query: 687 VPVIAKADCLTKKEVQRLKSRV 752
VPVIAK+D LT +E K ++
Sbjct: 174 VPVIAKSDSLTLEERAAFKQQI 195
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/87 (41%), Positives = 56/87 (64%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K+ ++GF+F +MVVG SG GKSTL+N+LF L + D QT ++ ++ +
Sbjct: 24 RKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQVV 83
Query: 421 EERGVKLRLTVVDTPGYGDAIDNTDCF 501
E V+L+L ++DTPGYGD I+N C+
Sbjct: 84 RENRVQLQLNLIDTPGYGDQINNDKCW 110
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 80.2 bits (189), Expect = 3e-16
Identities = 36/80 (45%), Positives = 51/80 (63%)
Frame = +3
Query: 513 QYIDEQFERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVP 692
+Y+DEQ ER+L + R D R+H C YFI+P G+ PLD+ MK+L VN+VP
Sbjct: 114 EYLDEQHERYLIHDQNSLRVPRKDTRVHVCLYFITPVSFGMLPLDVLAMKELSTHVNLVP 173
Query: 693 VIAKADCLTKKEVQRLKSRV 752
VIAKAD T E+ ++K ++
Sbjct: 174 VIAKADTFTTPELTQIKQKI 193
Score = 76.2 bits (179), Expect = 5e-15
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 ICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK-TNQTVKLDASTVEIE 423
I +K T+M+ G SG GK+T N+LF T L PE+ A E +T+++ + IE
Sbjct: 24 IKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKNKAVIE 83
Query: 424 ERGVKLRLTVVDTPGYGDAIDNTDCFRS 507
E G + LTV+DTPG+GD IDNT C+ +
Sbjct: 84 EDGFHINLTVLDTPGFGDFIDNTSCWNT 111
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +3
Query: 540 FLRDESGLNRRNI-VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 716
+ ++E ++R +D+RIH C +FI+P GH L+PL+I MK++ VNI+PVI KAD +
Sbjct: 202 YFQNEVKMDRETSEIDSRIHGCLFFINPNGHRLQPLEIYIMKKIDQFVNIIPVIGKADTM 261
Query: 717 TKKEVQRLKSRV 752
T E+ K RV
Sbjct: 262 TSDELNHFKKRV 273
Score = 65.3 bits (152), Expect = 9e-12
Identities = 33/102 (32%), Positives = 53/102 (51%)
Frame = +1
Query: 244 KICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
++C+ G + L+VVGES LGK+T VNS ++ D + +T+ +
Sbjct: 111 RVCRNGIDINLIVVGESSLGKTTFVNSFLQSN--------DTNFRPKKTMDFVEHKATLS 162
Query: 424 ERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKDFFE 549
+ K LT+VDTPG+GD DN++C+R L +F+
Sbjct: 163 DGDQKFNLTIVDTPGFGDKSDNSNCWRPIATNLLHRLNAYFQ 204
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 516 YIDEQFERFLRDESGLNRRN-IVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVP 692
Y++ QF++ L +ES + R + D R+ YFI+P GH L D+E MK+ +VN++P
Sbjct: 103 YLESQFDQALIEESKIKRNSKFTDTRVDALLYFIAPRGHCLSEFDLEAMKRFSKRVNVIP 162
Query: 693 VIAKADCLTKKEVQRLKSRVWK 758
VI ++ T++E++ K + K
Sbjct: 163 VIGNSNAFTEEELKNFKDVIMK 184
Score = 38.7 bits (86), Expect = 9e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 247 ICKKGFEFTLMVVGESGLGKSTLVNSLFLTD-LYPERVIPDATEKTNQTVKLDASTVEIE 423
+ KKG + +MV G S +NSL L E I ++ +++ +I
Sbjct: 12 LSKKGKKLRIMVAGSSYTSYQACINSLCSKQILEAETEIDPLKAHIDRILEIREFNADIL 71
Query: 424 ERGVKLRLTVVDTPGYGDAIDNTDCF 501
E + LTV++ G+GD IDN+ F
Sbjct: 72 EDEFHVDLTVIEVNGFGDKIDNSASF 97
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 423
F L+++G+SG+GKS L+ F D Y E I + +T +L+ TV+++
Sbjct: 9 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 453
L+VVGE+G GK+T + D Y + T+ A V EE GV+L TV
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVS-EEMGVRLGSTV 569
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK--TNQTVKLDASTVEI 420
L+VVG+ G GK+ L+ +F + +PER +P E T+ T ++ +E+
Sbjct: 17 LVVVGDGGCGKTCLL-IVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +1
Query: 277 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
+++G +G GKST+V+++ + +P +++ A E + +K +T IE
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKE-AREFIKYGKNTATIE 84
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 603 FYFISPFGHGLKPLDIEFMKQLH--NKVNIVPVIAK 704
FY IS FG+GL+ E+++ +H KVN P + K
Sbjct: 323 FYCISNFGYGLR----EYLRYIHQKQKVNAAPAVPK 354
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 28.7 bits (61), Expect = 0.96
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 531 FERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQL--HNKVNIVPVIAK 704
F++ L+D G R +I+DN C S F + PL + + + N VN V V+ K
Sbjct: 1188 FQKLLKDAKGQLRIHIIDNMSRICLRETSLF---ISPLMLSTLDMIIAENNVNEVSVLFK 1244
Query: 705 A 707
+
Sbjct: 1245 S 1245
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
L+++G+SG+GKS L+ P + + +T++LD ++++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQ 61
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 444
+F L+ +GE +GK++L+ + F+ D + D T + + + T+ +E+R V+L+
Sbjct: 11 KFKLVFLGEQSVGKTSLI-TRFMYDQF------DNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 445 LTVVDTPG 468
L DT G
Sbjct: 64 LW--DTAG 69
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 579 VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHN 674
+D C F+S F H L P + KQL N
Sbjct: 562 IDALSSCMEEFVSSFSHELTPFASQLAKQLRN 593
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.9
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 280 VVGESGLGKSTLVNSLFLTDLYP-ERVIPDATEKTN-QTVKLDASTVEIEERGVKLRLTV 453
+VG SG GKSTLV L T YP E + D TN T L ++++ L T+
Sbjct: 1133 IVGISGSGKSTLVELLRKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGSTI 1190
Query: 454 VDTPGYG 474
+++ YG
Sbjct: 1191 LESLLYG 1197
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPE 351
E+ L+VVG+ G+GKS L L + E
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDE 36
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.1
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGV--KLRL 447
+++VG++G GK+T V + L+ E I +A + T + A V L
Sbjct: 1189 VLLVGDTGCGKTT-VCQILAECLHKELHIINAHQDTENGDIIGAQRPVRNRSAVNYSLHS 1247
Query: 448 TVVDTPGYGDAIDNTDCFRSKFNTLTSSSKD 540
+ + +++D+ D KF L+SS K+
Sbjct: 1248 QLCEKFNVQESLDSIDDLIEKFEKLSSSEKN 1278
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 338 SVKNKELTRVDLPSPLSPTTIRVNSKPFLQIFCVPD*ADWQIQHNQ-VFPD 189
++K++E + +LPS T+ N+ L P ++WQ Q +FP+
Sbjct: 558 ALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPE 608
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 311 VDLPSPLSPTTIRVNSKPFLQIFCVP 234
+ +P PL+P+ +N +PF F +P
Sbjct: 188 MSVPPPLTPSASTINDQPFSNSFDLP 213
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 317 TRVDLPSPLSPTTIRVNSKPFLQIFCVPD*ADWQIQHNQVFPDLRMFYL 171
T +DL L P I ++KP L + A QI+H + RMF +
Sbjct: 634 TAIDLLDSLIPDIIAADNKPLLAL-AFHAFASLQIKHLDLLQPSRMFVI 681
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 253 KKGFEFTLMVVGESGLGKSTLVN 321
KK ++++GESG+GK++++N
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMN 26
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 247 ICKKGFEFTLMVVGESGLGKSTLVNSLFL--TDLYPERVIPDATEKTNQTVK 396
+C +G + VVGE+ GKSTL+ +L ++ E ++ T Q +K
Sbjct: 206 LCSRGHVY---VVGEANSGKSTLLKTLAKRGNGVFNELLLDSFLPGTTQAIK 254
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDAT 372
Q++ + G + +VG +GKSTL L T+L P AT
Sbjct: 37 QRLGRPGNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFAT 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,087
Number of Sequences: 5004
Number of extensions: 55133
Number of successful extensions: 269
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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