Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00476
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 137 1e-32
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 130 1e-30
SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06) 129 3e-30
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42) 95 6e-20
SB_2290| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09) 50 3e-06
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08) 33 0.19
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_11757| Best HMM Match : Ras (HMM E-Value=0) 33 0.25
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42) 32 0.58
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 31 0.77
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_16466| Best HMM Match : DUF258 (HMM E-Value=0) 30 1.8
SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05) 30 2.3
SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26) 30 2.3
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 29 3.1
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 29 5.4
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 29 5.4
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 28 7.2
SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4) 28 9.5
>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 272
Score = 137 bits (331), Expect = 1e-32
Identities = 58/81 (71%), Positives = 69/81 (85%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIV 689
+ YID QFE +LRDESGLNRRNI+D R+HCC YFI+P GHGL+P+D+EFMK LH KVNIV
Sbjct: 77 VDYIDHQFESYLRDESGLNRRNIMDTRVHCCLYFINPHGHGLRPVDVEFMKALHTKVNIV 136
Query: 690 PVIAKADCLTKKEVQRLKSRV 752
PVIAK+D LTK E+ RLK +V
Sbjct: 137 PVIAKSDSLTKTEISRLKRKV 157
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/39 (66%), Positives = 35/39 (89%)
Frame = +1
Query: 376 KTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNT 492
+ QTV ++++TVEIEE+GV+LRLTVVDTPG+ DA+DNT
Sbjct: 32 RIGQTVHIESNTVEIEEKGVRLRLTVVDTPGFADAVDNT 70
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 130 bits (314), Expect = 1e-30
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K KKGFEFT+MVVGESGLGKSTL+NSLFLTDLY P EK N+TV++ TVE+
Sbjct: 16 RKSVKKGFEFTVMVVGESGLGKSTLLNSLFLTDLYTPSSYPSIKEKLNKTVEVKPCTVEL 75
Query: 421 EERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKD 540
+E GV+LRLTVVDTPG+GDA+DNTDC++ + S ++
Sbjct: 76 KEGGVRLRLTVVDTPGFGDAVDNTDCWKPVIKYIDSKFEE 115
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKV 680
I+YID +FE L ES + R DNR+HCC YFISP GH LKPLDIEFMK+LHNK+
Sbjct: 106 IKYIDSKFEEHLNAESRVQRSPFPDNRVHCCLYFISPTGHSLKPLDIEFMKKLHNKI 162
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 203 GYVGFANLPNQV 238
GYVGFANLPNQV
Sbjct: 3 GYVGFANLPNQV 14
>SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)
Length = 101
Score = 129 bits (311), Expect = 3e-30
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K KKGFEFTLMVVGESGLGKSTL++SLFLTDLY +R I A E+ +TVK++ STVEI
Sbjct: 16 RKSVKKGFEFTLMVVGESGLGKSTLIDSLFLTDLYSDRKILSAEERIKKTVKIETSTVEI 75
Query: 421 EERGVKLRLTVVDTPGYGDAIDN 489
EERGVKLRLTVVDTPGYGD I++
Sbjct: 76 EERGVKLRLTVVDTPGYGDGINH 98
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 206 YVGFANLPNQVH 241
YVGFANLPNQVH
Sbjct: 4 YVGFANLPNQVH 15
>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
Length = 275
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/81 (51%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNRR-NIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNI 686
+ YI+ Q+++FL +E + R+ I D+R+HCC YFI+P GH LKP+D+EFMK+L VNI
Sbjct: 195 MDYINSQYDKFLTEEVTIERKPRIPDSRVHCCLYFIAPTGHRLKPIDVEFMKRLDKCVNI 254
Query: 687 VPVIAKADCLTKKEVQRLKSR 749
VPVIAKAD +T +E + + R
Sbjct: 255 VPVIAKADNMTLEEREAFRRR 275
Score = 84.2 bits (199), Expect = 1e-16
Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN---QTVKLDAST 411
+K K+GFEF LMVVG SGLGKST+VN+LF L P +T K +TV + + +
Sbjct: 106 RKSLKRGFEFNLMVVGASGLGKSTMVNTLFKGKLSR----PTSTGKPTIIPKTVDVKSVS 161
Query: 412 VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKDF 543
IEE+GV+L+LT+ DTPG+GD I+N C+ + + S F
Sbjct: 162 HVIEEKGVRLKLTITDTPGFGDQINNDKCWEPIMDYINSQYDKF 205
>SB_2290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 633 LKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSR 749
LKPLDIEFMK LH+ VNIVPVI KAD LT E++ +K R
Sbjct: 2 LKPLDIEFMKALHHIVNIVPVIGKADTLTPTELKEMKRR 40
>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
Length = 337
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +3
Query: 633 LKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRV 752
LK LD+ MKQL KVNI+P+IAKAD + K E+++ K ++
Sbjct: 22 LKSLDLVCMKQLDKKVNIIPIIAKADTIAKSELKQFKQKI 61
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 439 LRLTVVDTPGYGDAIDNTDCFRS 507
L+LT+VDT GYGD I+ D +S
Sbjct: 2 LKLTIVDTVGYGDQINKEDSLKS 24
>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
Length = 340
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGV-KLR 444
F ++VVG +G+GKS LVN+L E V+ + Q + STV E+ + + R
Sbjct: 61 FKVIVVGRTGVGKSHLVNTLM-----GEYVVEE-----GQDLDPCTSTVSKHEKRIGRTR 110
Query: 445 LTVVDTPGYGD 477
+TV D+PG D
Sbjct: 111 VTVWDSPGLQD 121
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +1
Query: 280 VVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN---------QTVKLDASTVEIEERG 432
++GE GKSTL+N L + P T + + Q + LD + + G
Sbjct: 44 IIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVTQSEG 103
Query: 433 VKLRLTVVDTPGYGDAIDNTD 495
+L++T GDA+D+ D
Sbjct: 104 KRLKMTREHIKAPGDALDDAD 124
>SB_11757| Best HMM Match : Ras (HMM E-Value=0)
Length = 211
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +1
Query: 253 KKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
+K + ++VG+ G+GK++L+ S ++ D +P +P A + + TV+++ IE
Sbjct: 14 RKKEQLKCVIVGDGGVGKTSLLVS-YMMDGFPNSYVPTAFDTYHVTVEVNKKLCMIE 69
>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
Length = 704
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 262 FEFTLMVVGESGLGKSTLVNSL 327
+EF +++G SG+GKS LVN L
Sbjct: 349 YEFKTLIIGNSGVGKSCLVNKL 370
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 244 KICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
KIC +F L+++GES +GKS+LV + + QTV LD +TV+ E
Sbjct: 18 KIC----QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 453
+++VGESG+GKS+L+ L TD + PD K+ TVE G K +L +
Sbjct: 11 ILIVGESGVGKSSLL--LRFTD---DTFDPDIGATIGVDFKVKTLTVE----GNKAKLAI 61
Query: 454 VDTPG 468
DT G
Sbjct: 62 WDTAG 66
>SB_16466| Best HMM Match : DUF258 (HMM E-Value=0)
Length = 293
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 277 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVV 456
M G SG+GKSTLVN+L T + I D+ + T T E + ++
Sbjct: 180 MFSGHSGVGKSTLVNALEPTLNLKTKQISDSHSQGQHT------TTFAEMYDLTFDAKII 233
Query: 457 DTPG 468
DTPG
Sbjct: 234 DTPG 237
>SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05)
Length = 68
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
F ++++G+SG+GKS L++ + E E +++++D T++ +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
L+VVG+ G+GKS + + T+ +P IP + + + LD +
Sbjct: 8 LVVVGDGGVGKSAFLITA-TTNAFPGEYIPTVFDNYSSNIMLDGKAYNV 55
>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
Length = 452
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 409 TVEIEERGVKLRLTVVDTPGYGDAIDNT--DCFRSKFNTLTS 528
TV +EE +LR +VDT G+ D DNT +C ++TS
Sbjct: 251 TVVLEEYLSQLRFNLVDTRGFFDIDDNTAEECLNIMTGSVTS 292
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Frame = +1
Query: 268 FTLMVVGESGLGKS--------TLVNSLFLTDLYPERVIPDA----TEKTNQTVKLDAST 411
F L+++G+SG+GKS +L L L +Y + TE T+ +D
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFALSLAQKLLLFRIYSHPTLSQQDDTYTESYISTIGVDFKI 68
Query: 412 VEIEERGVKLRLTVVDTPG 468
IE G ++L + DT G
Sbjct: 69 RTIELDGKTIKLQIWDTAG 87
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 280 VVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVD 459
+VG G GK+TLV +L + + D+ E+T L+ S +++ E LR+ V D
Sbjct: 572 IVGGEGAGKTTLVKALGFKYNWKLSTVMDSEERTK---GLEISNIDLNE---SLRMKVFD 625
Query: 460 TPG 468
G
Sbjct: 626 LGG 628
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 250 CKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEER 429
CK + F ++VVG+ G+GK++L+ T Y + ++ TV +D T ++
Sbjct: 8 CK--YSFKVLVVGDPGVGKTSLIRR--FTKGY-------FCDNSSSTVGVDVGTRVLDIH 56
Query: 430 GVKLRLTVVDTPG 468
G +++L DT G
Sbjct: 57 GDRVKLQCWDTAG 69
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F ++++G+S +GK+ L L T +PER T T+ +D +E G ++L
Sbjct: 47 FKIIIIGDSNVGKTCLAYRL-CTGKFPER--------TETTIGVDFWEKSLELNGEFVKL 97
Query: 448 TVVDTPG 468
+ DT G
Sbjct: 98 QLWDTAG 104
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLT 450
T+ VVG +GKS+++NSL + P T K+ Q V+LD ++ G+
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVT-KSMQEVQLDKHIKLLDSPGI----- 510
Query: 451 VVDTPGYGDAIDNTDCFR-----SKFNTLTSSSKD 540
V+DT AI +C + F L SS+D
Sbjct: 511 VMDTGDSDAAIILRNCVKIENIEDPFPQLRQSSED 545
>SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
F ++++G+SG+GKS L++ + + E ++ V+++ TV +
Sbjct: 19 FKIVLIGDSGVGKSNLLSRYTKNEFHLGSKATIGVELAHRNVEIEGKTVRAQ 70
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
++VVG++ GKS+L+N L P IP T + + D + VE++
Sbjct: 95 ILVVGQTNSGKSSLINELLGGTYLPTAEIP-CTSRIVRICYSDNNYVEVQ 143
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 423
F L+++G+SG+GKS+L+ F D + I + +T+ +D T++++
Sbjct: 9 FKLLLIGDSGVGKSSLL-LRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQ 60
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 362 GITRSGYKSVKNKELTRVDLPSPLSPTTIRVNSKPF 255
GI SG SV E PSP+SPT +N K F
Sbjct: 1923 GIFNSGSLSVDIPETNAERPPSPVSPTMYEMNRKMF 1958
>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEER 429
+M++G+ GK++L SLF P V + E T ++D V +R
Sbjct: 293 IMLIGQDRAGKTSLKKSLFGIPFDPSEVSTEGIEVDPSTFEVDVEQVSRWQR 344
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 262 FEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERG-VK 438
++F ++++G+S +GKS+L+ + E ++ TV +D +E +G V+
Sbjct: 12 YQFRIILIGDSTVGKSSLLRQFTEGQFF---------ENSDPTVGVDFHVRVLELKGDVR 62
Query: 439 LRLTVVDTPG 468
++L + DT G
Sbjct: 63 IKLQIWDTAG 72
>SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4)
Length = 429
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = -2
Query: 453 DGQTQLHAALFYLDRRCV*FHGLVCFLSSIRDYSFR--V*IGQEQRVDQSRFAQ--STFP 286
+G+ L AL DR +H L C L + + +S + + ++++V Q +F P
Sbjct: 231 EGEESLKRALDLNDRNA--YHQL-CLLYTKKYHSMKDAKWVAEQEKVYQQQFFYWYEDLP 287
Query: 285 DHHKGELETLFTDFLCT 235
H + +L+TL++ FL +
Sbjct: 288 SHKQHQLKTLYSTFLAS 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,262,436
Number of Sequences: 59808
Number of extensions: 380318
Number of successful extensions: 1371
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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