Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00476
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 98 7e-21
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 84 1e-16
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 84 1e-16
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 84 1e-16
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 34 0.096
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 34 0.096
AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.39
AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.39
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 32 0.39
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 31 0.90
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 31 0.90
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.2
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.2
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 30 2.1
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 30 2.1
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 2.1
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 30 2.1
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 30 2.1
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 2.7
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 29 2.7
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 29 2.7
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 29 2.7
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 4.8
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 28 6.3
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 28 6.3
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 28 6.3
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 8.4
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 8.4
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 8.4
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 8.4
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 28 8.4
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 28 8.4
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 28 8.4
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 97.9 bits (233), Expect = 7e-21
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNR-RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNI 686
+ Y++ +F +E+ ++R IVD +H C YFI P GHGLKP+DIE MK LH +VNI
Sbjct: 130 VNYVESKFFEQFCEETRIDRGEKIVDKCVHLCLYFIEPSGHGLKPIDIELMKHLHGRVNI 189
Query: 687 VPVIAKADCLTKKEVQRLKSRVWK 758
VPVI+KADCLT+ E+ R K ++ K
Sbjct: 190 VPVISKADCLTRDELLRFKKQIVK 213
Score = 87.8 bits (208), Expect = 7e-18
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA-TEKTNQTVKLDASTVE 417
++ K GF+FTLMVVG SGLGKST +N+LFL ++ A T TV+++ V+
Sbjct: 39 RRAVKNGFDFTLMVVGRSGLGKSTFINTLFLAEINNLNEKESAPTHPHPSTVRVEEKLVK 98
Query: 418 IEERGVKLRLTVVDTPGYGDAIDNTDCFRSKFNTLTSSSKDFFE 549
+ E V L LT+VDTPG+GDA++N+ C+ N + S FFE
Sbjct: 99 LVENSVSLNLTLVDTPGFGDAVNNSKCWEPIVNYVESK---FFE 139
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 161 SNETNKTFSNLETPGYVGFANLPNQV 238
++E+ +T + E P Y GFAN PNQV
Sbjct: 12 NDESLRTGQHKENPNYWGFANFPNQV 37
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVN 683
+ Y++ QFE +L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN
Sbjct: 176 VDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVN 235
Query: 684 IVPVIAKADCLTKKEVQRLKSRV 752
++PVIAK+D K E+ R K+++
Sbjct: 236 VIPVIAKSDTTCKDELLRFKAKI 258
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K + GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 91 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 145
Query: 421 EERGVKLRLTVVDTPGYGDAID 486
E G++++L +V+T G+GD +D
Sbjct: 146 AEGGIRVKLRLVETAGFGDQLD 167
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVN 683
+ Y++ QFE +L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN
Sbjct: 176 VDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVN 235
Query: 684 IVPVIAKADCLTKKEVQRLKSRV 752
++PVIAK+D K E+ R K+++
Sbjct: 236 VIPVIAKSDTTCKDELLRFKAKI 258
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K + GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 91 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 145
Query: 421 EERGVKLRLTVVDTPGYGDAID 486
E G++++L +V+T G+GD +D
Sbjct: 146 AEGGIRVKLRLVETAGFGDQLD 167
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = +3
Query: 510 IQYIDEQFERFLRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVN 683
+ Y++ QFE +L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN
Sbjct: 245 VDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVN 304
Query: 684 IVPVIAKADCLTKKEVQRLKSRV 752
++PVIAK+D K E+ R K+++
Sbjct: 305 VIPVIAKSDTTCKDELLRFKAKI 327
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +1
Query: 241 QKICKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEI 420
+K + GF+F LM VGE+G GK+TL+ SLF L E P E +TV+L T ++
Sbjct: 160 KKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCNHEL--KTVELRTCTKDV 214
Query: 421 EERGVKLRLTVVDTPGYGDAID 486
E G++++L +V+T G+GD +D
Sbjct: 215 AEGGIRVKLRLVETAGFGDQLD 236
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 34.3 bits (75), Expect = 0.096
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 423
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.096
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 423
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.3 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 75 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 176
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.2 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 75 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 176
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 444
E+ MVVG +GKS+L+N++ L +R +A + TV++ + V I + K
Sbjct: 115 EYQAMVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQ-NRVRILD---KPP 170
Query: 445 LTVVDTPG 468
+ ++DTPG
Sbjct: 171 VYIIDTPG 178
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 444
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 445 LTVVDTPG 468
L + DT G
Sbjct: 60 LQIWDTAG 67
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 444
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 445 LTVVDTPG 468
L + DT G
Sbjct: 60 LQIWDTAG 67
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
+F L+++GES +GKS+LV + + QTV LD +T++ E
Sbjct: 19 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFE 71
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST--VEIEERGVKLR 444
++++G+SG+GK++L+N + DL + V + T+ D T V I++R V L+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRRFMNQYKATIGADFLTRDVNIDDRTVTLQ 70
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 411
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 3 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 50
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
F ++++G+SG+GKS L++ + + E E +++ ++ TV+ +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQ 63
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSL--FLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
L + G GK +L N + F T + PERV PD E N K+ +T + R V L +
Sbjct: 174 LRIYGARNCGKKSLANRIHHFATSMAPERVDPD--ENGNDYTKM--TTFLLNGREVTLEI 229
Query: 448 TVVDT 462
+ T
Sbjct: 230 LLEST 234
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 265 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 411
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 6 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 53
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F L+++G+SG+GKS+L+ F + + E I T+ +D ++ G +++L
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI--------TTIGVDFKIRTMDINGQRVKL 61
Query: 448 TVVDTPG 468
+ DT G
Sbjct: 62 QIWDTAG 68
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
T23F1.5 protein.
Length = 1262
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -3
Query: 461 VSTTVKRSFTPRSSISTVDASNFTVWFVFSVASGITRSGYKSVKNKELTRVDLPSPLSPT 282
+ + +K S T +S + + F V S + I +K++ R +PS +SP
Sbjct: 1149 ICSNIKSSVTNTTSCEDIPSPPFCADVVTSPPNSILSDASSFIKHR---RASVPSEVSPA 1205
Query: 281 TIRVNSKPFLQIFCVPD 231
T V + L C PD
Sbjct: 1206 TQSVRTSICLSKSCRPD 1222
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 448 TVVDTPG 468
+ DT G
Sbjct: 60 QIWDTAG 66
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 448 TVVDTPG 468
+ DT G
Sbjct: 60 QIWDTAG 66
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 448 TVVDTPG 468
+ DT G
Sbjct: 60 QIWDTAG 66
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 435
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 468 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 523
Query: 436 KLRLTVVDTPGYGDAIDN 489
+TVVDTPG D + N
Sbjct: 524 PYNVTVVDTPGVEDKMGN 541
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 435
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 442 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 497
Query: 436 KLRLTVVDTPGYGDAIDN 489
+TVVDTPG D + N
Sbjct: 498 PYNVTVVDTPGVEDKMGN 515
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLY-PERVIPDATEKTNQTVKLDASTVEI 420
++++GESG+GKS+L+ F+ D++ PE+ + ++ +D + V++
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKL 62
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 447
F L+++G+SG+GKS+L+ F + + E I T V T++I + VKL++
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI------TTIGVDFKIRTMDINGQRVKLQI 63
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
+ + VVG++G GKS+L++ L +T Y + D + TV + VE +
Sbjct: 238 YKIYVVGDTGTGKSSLISQL-ITSEY-KNAFADEIQDYENTVSICIGGVECD 287
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 268 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 423
F ++++G+SG+GKS L++ + E E +++ ++ TV+ +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQ 63
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLF 330
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 274 LMVVGESGLGKSTLVNSLFLTDLYP 348
+ +VGE+G GK+TL+ L L DL P
Sbjct: 526 ICIVGENGAGKTTLL-KLLLDDLQP 549
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLF 330
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLF 330
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLF 330
T+ +VG SG GKSTL+ LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 360
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 409 TLLITGDSGIGKTSLMR--VIADMWPHQGI 436
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 360
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 437 TLLITGDSGIGKTSLMR--VIADMWPHQGI 464
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 271 TLMVVGESGLGKSTLVNSLFLTDLYPERVI 360
TL++ G+SG+GK++L+ + D++P + I
Sbjct: 409 TLLITGDSGIGKTSLMR--VIADMWPHQGI 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,104
Number of Sequences: 27780
Number of extensions: 297752
Number of successful extensions: 1044
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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