Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00474
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.15 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.15 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.34 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   9.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.7  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   9.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 276 FGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQ 419
           FGQD N DGV+N    + +        T +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 276 FGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQ 419
           FGQD N DGV+N    + +        T +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 ASAQ*PHVMRKRPHV--SPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
           +SA  P V    PH+  SP++ +P LH        P   S T  +S  S+  +PAS
Sbjct: 169 SSASSPSVTAA-PHLRDSPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPAS 223


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 67  GCICQAISGCKQGLQCEGET 126
           G  C  ISG  +   C G+T
Sbjct: 440 GSYCDVISGNAENGSCSGKT 459


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 67  GCICQAISGCKQGLQCEGET 126
           G  C  ISG  +   C G+T
Sbjct: 441 GSYCDVISGNAENGSCSGKT 460


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 67  GCICQAISGCKQGLQCEGET 126
           G  C  ISG  +   C G+T
Sbjct: 441 GSYCDVISGNAENGSCSGKT 460


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 682 FILIVKKYIYFFY*ITFSNLYFEYTKNPLMKMLLY 578
           F++IV    +F   +    LYF    NP++  + +
Sbjct: 535 FVVIVITIFFFTANVQAGELYFMSLLNPILSNVTF 569


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 682 FILIVKKYIYFFY*ITFSNLYFEYTKNPLMKMLLY 578
           F++IV    +F   +    LYF    NP++  + +
Sbjct: 260 FVVIVITIFFFTANVQAGELYFMSLLNPILSNVTF 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,370
Number of Sequences: 336
Number of extensions: 3974
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)