Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00474
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.85 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.0  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   7.9  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    25   7.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   7.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 119 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPA 9
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPS 91


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 VNCYDYMAIHKKGGYGCTGELP 371
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 125 VSPSHCRPCLHPEIAWQMQPRHT 57
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 169 GKPTINGLSPDAPDAYSSCTVDPYCAAQTSKTT*EDLARTATATEWSTAMTTWRSTRREA 348
           GKP   G + +AP A S+ T     +   S      L  T  A+  +TA + +   +   
Sbjct: 174 GKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPAT 233

Query: 349 TGAP-ANFLLTM*TCLTSASMS 411
           T AP +N  +T  + +T  + S
Sbjct: 234 TSAPGSNTTVTPSSSITGTNDS 255


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 485 YGNPSVIVPSAPILFLR 535
           YGN SV++ SAP  F R
Sbjct: 140 YGNDSVLIDSAPYFFSR 156


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 203 ASGERPLIVG--FPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPR 63
           A G++ LIVG    A+ +  HV+    HV     +  L  E+AW++Q +
Sbjct: 20  AQGKKVLIVGGGVVAAGRILHVLNADAHVIVVSPKAGLCKEVAWRIQEK 68


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 269 HVVLDVCAAQYGSTVQL 219
           HV+LD+CAA    T QL
Sbjct: 161 HVILDMCAAPGSKTAQL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,806
Number of Sequences: 5004
Number of extensions: 61929
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)