Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00474
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0235 - 1964981-1964997,1965545-1966325 30 1.5
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 30 2.0
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 29 4.7
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 29 4.7
06_01_1147 + 9606860-9606989,9607078-9607811,9607890-9608126,960... 28 6.2
08_02_0778 + 21119812-21119941,21120030-21120463,21120576-211206... 28 8.3
07_03_1513 - 27327702-27328604,27329957-27329995,27330413-273306... 28 8.3
07_03_0139 + 14143383-14143512,14143601-14144334,14144413-141448... 28 8.3
06_03_0771 + 24473176-24473203,24473292-24474025,24474104-244745... 28 8.3
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 28 8.3
04_03_0262 + 13597021-13597150,13597239-13597972,13598051-135985... 28 8.3
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 52 TEVCLGCICQAISGCKQG-LQCEGETCGLFRITWGYWADAGKPTINGLSPDAP-DAYSSC 225
T +CL + + C + +CE TCG + + +W G P N + +P A +SC
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 431 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 300
L +L+ I+ + KHV ++ R K G P + LL H +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELQQEQHTSMSGGTSASRSSRNPRS 68
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 303 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 428
+V C Y+ I+ +GG GC + V C+NV Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392
>06_01_1147 +
9606860-9606989,9607078-9607811,9607890-9608126,
9608433-9609265,9609598-9609856,9610294-9610377,
9610484-9610498
Length = 763
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIQELPQEQHTSMSGGTSASRSSRNPRS 68
>08_02_0778 +
21119812-21119941,21120030-21120463,21120576-21120695,
21121356-21121898,21121988-21122172,21122255-21122425,
21122505-21122805
Length = 627
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELPQEQHTSMSGGTSASRSSRNPRS 68
>07_03_1513 -
27327702-27328604,27329957-27329995,27330413-27330692,
27330772-27330942,27331025-27331857,27331939-27332400,
27332479-27333212,27333301-27333430
Length = 1183
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELPQEQHTSMSGGTSASRSSRNPRS 68
>07_03_0139 +
14143383-14143512,14143601-14144334,14144413-14144874,
14144956-14145788,14145871-14146041,14146121-14146379,
14146828-14146866,14147903-14147989
Length = 904
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELPQEQHTSMSGGTSASRSSRNPRS 68
>06_03_0771 +
24473176-24473203,24473292-24474025,24474104-24474565,
24474647-24475479,24475562-24475732,24475812-24476112
Length = 842
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 6 PEIHELPQEQHTSMSGGTSASRSSRNPRS 34
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELPQEQHTSMSGGTSASRSSRNPRS 68
>04_03_0262 +
13597021-13597150,13597239-13597972,13598051-13598512,
13598594-13599136,13599385-13599426,13599594-13599679,
13599759-13600017,13600456-13600494,13603624-13603737
Length = 802
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 92 PEIAWQMQPRHTSVTGGSSETSAKQTPAS 6
PEI Q +HTS++GG+S + + + P S
Sbjct: 40 PEIHELPQEQHTSMSGGTSASRSSRNPRS 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,480
Number of Sequences: 37544
Number of extensions: 421028
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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