Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00474
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)                   28   6.4  
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)                       28   8.4  

>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 145 TWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTSKTT 267
           TW +W+  G P ++  S  A  + S  T  P+ A +  + T
Sbjct: 38  TWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNT 78


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 332  DRHVVIAVDHSVAVAVLAKSSHVV---LDVCAAQYGSTVQLE*ASGASGERPLIVGFP 168
            DR VV   D+S+   +LA++   +   +D+C A   +  +L+  SG SGE   I   P
Sbjct: 1022 DRIVVGIADNSIMKKLLAEAKLTLAKCVDICRANEATAKRLKEMSGQSGEISAITTGP 1079


>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
          Length = 85

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 261 NYMRRFGQDCNGDGVVNCYDYMAIHKKG 344
           N++  FG   NG G  NC  ++AI+ KG
Sbjct: 50  NHVTSFGSLGNGRGQFNCPSHVAINSKG 77


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 264  YMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 392
            +++  G + +GDG ++  + +AI    GY    +L  N ++VF
Sbjct: 923  FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965


>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 300 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQYRS 428
           G  NC   +A+ K GG   +G L +  ++ F +   V   YRS
Sbjct: 23  GDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRS 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,170,871
Number of Sequences: 59808
Number of extensions: 492717
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)