Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00474
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 41 7e-04
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 38 0.009
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 33 0.15
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 33 0.20
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 29 2.4
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 29 2.4
Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical p... 27 9.8
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 27 9.8
AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfa... 27 9.8
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 49 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDA 213
V+ CL CIC SGCK + C + +CG ++I GY+ D G+PT G + +A A
Sbjct: 16 VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--A 72
Query: 214 YSSCTVDPYCA 246
+ C D CA
Sbjct: 73 WKRCADDLNCA 83
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 255 VQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 401
V+NY R+ CNG G+ C H G GC Y N C
Sbjct: 87 VENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGVKSC 135
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 61 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPT-INGLSPDAPDAYSSCT 228
CL CIC SGCK + +CG ++I Y+ D G+PT +G + +A A+ C
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77
Query: 229 VDPYCA 246
D CA
Sbjct: 78 NDLSCA 83
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +3
Query: 255 VQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 401
V+NY R+ C G G C H G GC Y N C
Sbjct: 87 VENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 61 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 225
CL CIC SGCK + C + +CG ++I Y+ D G+P +G S + A+ C
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76
Query: 226 TVDPYCA 246
D CA
Sbjct: 77 ADDLKCA 83
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 255 VQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 401
V+NY R+ +C G G C H G GC Y + C
Sbjct: 87 VENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/108 (23%), Positives = 43/108 (39%)
Frame = +1
Query: 100 QGLQCEGETCGLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTSKTT*EDL 279
QG+ +G+ R +G PT+ + DA D T++ + T+ TT
Sbjct: 228 QGVYYDGQVLKGVRAKQFSMRTSGSPTLRRMKRDAGDNTCDYTIESTSTSTTTPTTTTVT 287
Query: 280 ARTATATEWSTAMTTWRSTRREATGAPANFLLTM*TCLTSASMSSRST 423
+ + T T+ +T + +T P+ T T S +S ST
Sbjct: 288 STVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTST 335
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/108 (23%), Positives = 43/108 (39%)
Frame = +1
Query: 100 QGLQCEGETCGLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTSKTT*EDL 279
QG+ +G+ R +G PT+ + DA D T++ + T+ TT
Sbjct: 228 QGVYYDGQVLKGVRAKQFSMRTSGSPTLRRMKRDAGDNTCDYTIESTSTSTTTPTTTTVT 287
Query: 280 ARTATATEWSTAMTTWRSTRREATGAPANFLLTM*TCLTSASMSSRST 423
+ + T T+ +T + +T P+ T T S +S ST
Sbjct: 288 STVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTST 335
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +3
Query: 249 ADVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 401
A QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 90 ASFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 524 ILVLMEL*LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 348
I VL L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 112 IRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 524 ILVLMEL*LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 348
I VL L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 112 IRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical
protein C34C12.2 protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +1
Query: 160 ADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTSKTT*EDLART---ATATEWSTAMTTWR 330
+D G P L PD P S+C P+ TS ++ + + + T+ S + T
Sbjct: 330 SDFGSPLAKYLKPDQPSTSSACYGKPFYFESTSSSSRKPITASPGPPGRTQISDQLNTGE 389
Query: 331 STRREATGAPANF 369
+G P NF
Sbjct: 390 VRYVVNSGKPFNF 402
>Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical
protein C34F6.4 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 500 LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 372
L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 102 LPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = -3
Query: 300 RRRCSPGQIFSCSF------GRLRGAVRVYSAARVGIRSVR*ETIDSGFSGISPVAPCD 142
R RC IF C + G ++GAV +YS +G + S G+ P+ C+
Sbjct: 167 RSRCLQLIIFDCRYPFEYFGGHIKGAVNIYSLDELGKYLYDEYGVKSTLGGLIPIFYCE 225
>AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfate
2O-sulfotransferase protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 500 LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 372
L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 102 LPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,950
Number of Sequences: 27780
Number of extensions: 360468
Number of successful extensions: 808
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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