Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00468
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.023
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.38 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.38 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.2  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 0.023
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +3

Query: 3   ARASPSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSL 182
           ++ASP+AA RS+  P+G    T   S +   +   ++ P +    P+ ++T   +  SSL
Sbjct: 207 SKASPAAAPRSVATPTG--IPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSL 264

Query: 183 SETKDSVAQRLS 218
             T    A  L+
Sbjct: 265 ITTPSPSASPLA 276


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
           PP+    + +G +IL SL+ F  +      TTS A PL
Sbjct: 236 PPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
           PP+    + +G +IL SL+ F  +      TTS A PL
Sbjct: 236 PPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPL 273


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +1

Query: 88  RRS*LRAGNGHRCIQQLPREVLRTSRRSGHHYRKRKIPLPRGSLPTLVLGYGSLRHHE 261
           RR   +  +  +  QQ       T+ ++ HH+    I      +   V   GSL+HH+
Sbjct: 294 RRMKNKKNSQRQAAQQQNNNNAATNNQNHHHHAGHHIHAQHHVVNHHVAANGSLKHHQ 351


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 461 STDPYGVLPLWRSNDLN 411
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -1

Query: 342  WYHRTIRCWRTSLTDVHVALHD----GVICGLVVPQASIPKNEGWKRASGQRNLSFPIV 178
            WYH  +R    +    +VA ++     V  G + P   IPK + ++      NL  P+V
Sbjct: 1559 WYH--LRVTAHNNAGFNVAEYEFATLTVTGGTIAPAREIPKEDTFQIILANLNLVVPVV 1615


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 12  SPSAATRSLPPPSGKSFVTSRRSCATSLLTSSRK 113
           SP +  RS P P     V   + C+T    S  K
Sbjct: 411 SPGSDQRSTPSPRVYGNVNENQDCSTPTENSPTK 444


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -2

Query: 560 FRSTSCVQWRGQTRRTPVRDPHLLEGREGGEDRSTDPYGVLPLWRSNDL 414
           FR+ SC++      +     P  L   E   D S   Y V  +W   DL
Sbjct: 251 FRTPSCLETFHTLEKCRPDPPQNLVINESIIDLSQQTYNVHLMWSKPDL 299


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 507 NRSTTSLAPPLYTGSASKRTARRC 578
           N+S+TS  PP +  S SK     C
Sbjct: 66  NKSSTSPYPPNHPLSGSKHLCSIC 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,573
Number of Sequences: 336
Number of extensions: 3786
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)