Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00468
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 146 2e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 90 2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 2e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 5e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 1e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 2e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 41 2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 9e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.014
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 0.93
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 0.93
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 3.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 6.6
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 6.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 146 bits (355), Expect = 2e-36
Identities = 70/81 (86%), Positives = 74/81 (91%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
L ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGN
Sbjct: 193 LMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGN 252
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFR PEALFQPS LG+E G
Sbjct: 253 ERFRAPEALFQPSALGLENAG 273
Score = 133 bits (322), Expect = 2e-32
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLST 351
Query: 486 FQQMWISNRSTTSLAP 533
FQQMWIS + P
Sbjct: 352 FQQMWISKQEYDESGP 367
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG + HE TYNSIMKCDVDIRK
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRK 291
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGP IV+RKCF
Sbjct: 359 KQEYDESGPGIVYRKCF 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/81 (48%), Positives = 56/81 (69%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+
Sbjct: 193 LLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGS 252
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ER+ CPE LFQP +G E G
Sbjct: 253 ERYECPECLFQPHLVGSEQPG 273
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 12/78 (15%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 455
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 456 GGSILAS-LSTFQQMWIS 506
GG++LA ++ MW+S
Sbjct: 353 GGAVLADIMAQNDHMWVS 370
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.4 bits (197), Expect = 2e-17
Identities = 38/81 (46%), Positives = 50/81 (61%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G
Sbjct: 198 LRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGT 257
Query: 191 ERFRCPEALFQPSFLGMEACG 253
E F PE LF P +G EA G
Sbjct: 258 ECFSAPEVLFNPEMMGSEASG 278
Score = 72.5 bits (170), Expect = 4e-14
Identities = 32/67 (47%), Positives = 49/67 (73%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 488
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 489 QQMWISN 509
+++ I++
Sbjct: 358 RRLLITS 364
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 5e-11
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 479
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 480 STFQQMWISNR 512
TF Q+WIS +
Sbjct: 405 GTFHQLWISRQ 415
Score = 33.1 bits (72), Expect = 0.033
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 122 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 226
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 1e-09
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 482
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 483 TFQQMWISNR 512
FQ +W+S +
Sbjct: 403 NFQHLWVSKQ 412
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/79 (36%), Positives = 40/79 (50%)
Frame = +2
Query: 29 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 208
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 209 EALFQPSFLGMEACGTTRP 265
E LF PSF + TT P
Sbjct: 300 EILFNPSFSASRSAETTPP 318
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 241 GSLRHHETTYNSIMKCDVDIR 303
GS+ HE Y SI+ CD ++R
Sbjct: 320 GSVGLHELVYQSILACDSELR 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Frame = +2
Query: 47 EREIVRDIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------ 166
E IV +IKE +CYV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 167 GQVITIGNERFRCPEALFQPSFLGMEACG 253
QV+ + NERF PE LF PS + + G
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAG 299
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 434
L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILAS 476
+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNR 587
Query: 477 LSTFQQMWISN 509
+ ++WI N
Sbjct: 588 IRIVSELWIKN 598
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 38.3 bits (85), Expect = 9e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Frame = +3
Query: 282 EVRRGHP*DLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKIKI 419
+VR+G LY N VLSGG+T++ +R+Q+++ + + + +
Sbjct: 321 DVRKG----LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNV 376
Query: 420 IAPPERKYSVWIGGSILASLSTF 488
I+ ++ +VW GGS+LA F
Sbjct: 377 ISHKRQRNAVWFGGSLLAQTPEF 399
Score = 29.5 bits (63), Expect = 0.40
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 68 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQP 226
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 464
L +N +++GG PG+ R+++E+T++ P I + W G S
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 191 ERFRCPEALFQPSFLGMEACG 253
E+ R PE +F PS +G++ G
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAG 614
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 57 SFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 227
+F +R S A SS + P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.3 bits (60), Expect = 0.93
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 33 SLPPPSGKSFVTSRRSCATSLLTSSR--KWPPLHPAAPSRSLTNFPTVRSSLSETKDSVA 206
S P S S V+S A S L S+ + PPL P P S + + ++ S++ + A
Sbjct: 148 SPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASA 207
Query: 207 QRLSSN 224
LSS+
Sbjct: 208 SALSSD 213
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 9 ASPSAATRSLPPPSGK 56
A+PS RSLPPPSG+
Sbjct: 636 ATPSNPPRSLPPPSGQ 651
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +3
Query: 36 LPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPA-AP---SRSLTNFPTVRSSLSETKDSV 203
+PP G + +TSR S SS+ L P +P SR ++ P++ SS+ D
Sbjct: 233 VPPAHGSTSMTSRSKLDDSTDNSSKPRTSLQPGESPMKSSRDISRKPSMASSVLSPSDYF 292
Query: 204 AQ--RLSSNP 227
Q R S P
Sbjct: 293 PQHRRFQSAP 302
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 375 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 181 SDDLTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 71
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 RRSCATSLLTSSRKWPPLHPAAPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 233
R++ A + +S+ + P++P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 6 RASPSAATR-SLPPPSGKSF--VTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRS 176
R SA R S+PPPS S + S+ S L PP PAAP +S + P++ S
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP-----PPAQPAAPVKSPPSAPSLPS 192
Query: 177 SL 182
++
Sbjct: 193 AV 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,830
Number of Sequences: 5004
Number of extensions: 58308
Number of successful extensions: 243
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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