Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00468
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 163 8e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_56| Best HMM Match : Actin (HMM E-Value=0) 163 1e-40
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 7e-40
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 9e-39
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 126 1e-29
SB_54| Best HMM Match : Actin (HMM E-Value=0) 103 9e-23
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 71 1e-12
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 69 2e-12
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 1e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 42 4e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_6662| Best HMM Match : DUF755 (HMM E-Value=3.4) 33 0.24
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 31 0.98
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 29 2.3
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 29 2.3
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.0
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 3.0
SB_58012| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 29 4.0
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 4.0
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 28 5.2
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 28 5.2
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 5.2
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 28 6.9
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 6.9
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 27 9.1
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 9.1
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 27 9.1
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.1
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 27 9.1
SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12) 27 9.1
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 163 bits (397), Expect = 8e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGN
Sbjct: 194 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGN 253
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFRCPEA+FQPSFLGME+ G
Sbjct: 254 ERFRCPEAMFQPSFLGMESAG 274
Score = 138 bits (333), Expect = 4e-33
Identities = 65/78 (83%), Positives = 69/78 (88%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 353 FQQMWISKQEYDESGPSI 370
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG S HETTYNSIMKCDVDIRK
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 292
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGPSIVHRKCF
Sbjct: 360 KQEYDESGPSIVHRKCF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 163 bits (396), Expect = 1e-40
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGN
Sbjct: 156 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGN 215
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFRCPEA+FQPSFLGME+ G
Sbjct: 216 ERFRCPEAMFQPSFLGMESAG 236
Score = 139 bits (337), Expect = 1e-33
Identities = 66/78 (84%), Positives = 69/78 (88%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 255 DLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 314
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 315 FQQMWISKQEYDESGPAI 332
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG S HETTYNSIMKCDVDIRK
Sbjct: 221 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 254
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGP+IVHRKCF
Sbjct: 322 KQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 163 bits (396), Expect = 1e-40
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGN
Sbjct: 194 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGN 253
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFRCPEA+FQPSFLGME+ G
Sbjct: 254 ERFRCPEAMFQPSFLGMESAG 274
Score = 138 bits (334), Expect = 3e-33
Identities = 65/78 (83%), Positives = 69/78 (88%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLST 352
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 353 FQQMWISKQEYDESGPSI 370
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG S HETTYNSIMKCDVDIRK
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 292
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGPSIVHRKCF
Sbjct: 360 KQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 163 bits (396), Expect = 1e-40
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGN
Sbjct: 193 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGN 252
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFRCPEA+FQPSFLGME+ G
Sbjct: 253 ERFRCPEAMFQPSFLGMESAG 273
Score = 138 bits (334), Expect = 3e-33
Identities = 65/78 (83%), Positives = 69/78 (88%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 352 FQQMWISKQEYDESGPSI 369
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG S HETTYNSIMKCDVDIRK
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGPSIVHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 160 bits (389), Expect = 7e-40
Identities = 76/81 (93%), Positives = 79/81 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
LTERGYSFTTTAEREIVRDIKEKL YVALDFEQEMATAA+SSSLEKSYELPDGQVITIGN
Sbjct: 193 LTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGN 252
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFRCPEA+FQPSFLGME+ G
Sbjct: 253 ERFRCPEAMFQPSFLGMESAG 273
Score = 136 bits (329), Expect = 1e-32
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 292 DLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLST 351
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 352 FQQMWISKQEYDESGPSI 369
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG S HETTYNSIMKCDVDIRK
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGPSIVHRKCF
Sbjct: 359 KQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 157 bits (380), Expect = 9e-39
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +2
Query: 17 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 196
ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSS+EKSYELPDGQVITIGNER
Sbjct: 169 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNER 228
Query: 197 FRCPEALFQPSFLGMEACG 253
FRCPEAL QPSFLGME+ G
Sbjct: 229 FRCPEALLQPSFLGMESSG 247
Score = 140 bits (338), Expect = 1e-33
Identities = 65/78 (83%), Positives = 70/78 (89%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLST
Sbjct: 266 DLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLST 325
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWIS + P +
Sbjct: 326 FQQMWISKQEYDESGPAI 343
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/34 (64%), Positives = 22/34 (64%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P L LG S HETTYNSIMKCDVDIRK
Sbjct: 232 PEALLQPSFLGMESSGIHETTYNSIMKCDVDIRK 265
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
+QEYDESGP+IVHRKCF
Sbjct: 333 KQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 126 bits (305), Expect = 1e-29
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLST
Sbjct: 66 DLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLST 125
Query: 486 FQQMWISNRSTTSLAPPL 539
FQQMWI+ PP+
Sbjct: 126 FQQMWIAKEEYHEYGPPI 143
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/43 (81%), Positives = 40/43 (93%)
Frame = +2
Query: 125 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 253
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA G
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPG 47
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 205 PRGSLPTLVLGYGSLRHHETTYNSIMKCDVDIRK 306
P LG + HE YN IMKCDVDIRK
Sbjct: 32 PEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRK 65
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 506 EQEYDESGPSIVHRKCF 556
++EY E GP IVHRKCF
Sbjct: 133 KEEYHEYGPPIVHRKCF 149
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 103 bits (248), Expect = 9e-23
Identities = 47/81 (58%), Positives = 60/81 (74%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGN 190
+TERGYSF +TAE++I+RD+KE LCY A+D+E+E+ A +S E Y LPDGQ I IG+
Sbjct: 2238 VTERGYSFQSTAEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGS 2297
Query: 191 ERFRCPEALFQPSFLGMEACG 253
ERFR E LFQPS LG + G
Sbjct: 2298 ERFRAAEPLFQPSLLGRDIDG 2318
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 256 HETTYNSIMKCDVDIR 303
HE+ + SI KCD+D+R
Sbjct: 2320 HESIFKSIKKCDIDLR 2335
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/78 (50%), Positives = 51/78 (65%)
Frame = +2
Query: 20 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF 199
RGY+F TA+ E VR +KEKLCYV + EQE A ++ L + Y LPDG+V+ + ERF
Sbjct: 200 RGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERF 259
Query: 200 RCPEALFQPSFLGMEACG 253
PEALFQP + +E G
Sbjct: 260 EAPEALFQPHLINVEGVG 277
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITAL 392
+ Y + VLSGG+TMYPG+ R+++EI L
Sbjct: 296 EFYKHIVLSGGSTMYPGLPSRLEREIKQL 324
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSVWIGGSILASL 479
LY VL G T+ Q +TA KI+I PP RK+ V++GG++LA +
Sbjct: 324 LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADI 381
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 11 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 115
+TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 72 MTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +2
Query: 17 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 196
+RG++FT+++ +IV DIKEK+CY++ D +E+ ++ L K Y LPDGQ+I+IG E
Sbjct: 826 QRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYEC 885
Query: 197 FRCPEALFQPSFL 235
E LF+P L
Sbjct: 886 ISSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/60 (36%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASL 479
L+ + +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILASL
Sbjct: 171 LFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 16/76 (21%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEIT----------------ALAPSTMKIKIIAPPERK 440
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 441 YSVWIGGSILASLSTF 488
Y+VW GGS+LAS F
Sbjct: 302 YAVWFGGSMLASTPEF 317
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Frame = +3
Query: 309 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 461
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 462 SILASLSTFQQMWISNRSTT 521
+I SL +++RSTT
Sbjct: 137 AIFGSLEV-----LADRSTT 151
>SB_6662| Best HMM Match : DUF755 (HMM E-Value=3.4)
Length = 167
Score = 32.7 bits (71), Expect = 0.24
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 ARASPSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTN-FPT-VRS 176
AR P++A + P SG+S +SRRS S S + ++ SR + P+ R
Sbjct: 66 ARVRPASAR--VRPASGRSTASSRRSRPASAKISHSSYKDYLVSSASRDIPRVVPSETRP 123
Query: 177 SLSETKDSVAQRLSSNPRSWVWKLAAPRDHI 269
S+ ET+ S RL+ +S W + R+++
Sbjct: 124 SVGETRTS-QLRLNMRKQSGDWMMRETREYL 153
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRR 293
S+ SETK SV +R + + W+W+ HHE RR
Sbjct: 96 STKSETKASVVERFNRTSKEWMWRYFT-------HHETRR 128
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 596 GRGLLEAATRGAFRSTSCVQWRGQTRRTPVRDPHLLEGREGGEDRST 456
GR ++TRG RST+ + R +TR + R H REG RST
Sbjct: 253 GRTGTRSSTRGRSRSTATSRGRTRTRTSTRRRSH-TSSREGTRSRST 298
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRRGHP 302
S+ SETK SV +R + + W+W+ HHE GHP
Sbjct: 439 STKSETKASVVERFNRTFKGWMWRYFP-------HHERVPGHP 474
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRR 293
S+ SETK SV +R + + W+W+ HHE RR
Sbjct: 457 STKSETKASVVERFNRTFKGWMWRYFT-------HHETRR 489
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRR 293
S+ SETK SV +R + + W+W+ HHE RR
Sbjct: 93 STKSETKASVVERFNRTFKGWMWRYFT-------HHETRR 125
>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 136 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 222
LPR ++R HY++ +PLPRG P
Sbjct: 132 LPRGGSPLTKRRESHYQEEGVPLPRGGSP 160
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 136 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 222
LPR ++R HY++ +PLPRG P
Sbjct: 154 LPRGGSPLTKRRESHYQEEGVPLPRGGGP 182
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 47 EREIVRDIKEKLCYVALDFEQEMATA---ASSSSLEKSYELPD 166
E ++ +KE CYV+ F ++M A +++ + Y LPD
Sbjct: 392 ETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVLPD 434
>SB_58012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 ARASPSAATRSLPPPSGKSFVTSRRSCAT-SLLTSSRKWPPLHPAAPSRSLTNFP 164
+R+S S +R P P S R +C T S++ SSRK P SR + FP
Sbjct: 17 SRSSLSDRSRKRPAPITTSITNHRLNCHTNSVILSSRKRPTYRKLPASRFIL-FP 70
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 78 SCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSV 203
SCA S+ + L PA+P+ S++ F T++ T+ S+
Sbjct: 970 SCAEPRSIDSKHYTALSPASPASSISCFSTLQLKQMPTRSSI 1011
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 206 PEALFQPSFLGMEACGTT 259
PE +FQPS LG+E G T
Sbjct: 3 PEIIFQPSMLGLEQAGIT 20
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 71 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE 211
+EK+ L+ E E A ++ LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRR 293
S+ +ETK SV +R + + W+W+ HHE RR
Sbjct: 100 STKNETKASVVERFNRTFKGWMWRYFT-------HHETRR 132
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 318 NTVLSGGTTMYPGIADRMQKEITALAP 398
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +3
Query: 42 PPSGKSFVTSRRSCATSLLTSSRKWPPL-------HPAAPSRSLTNFPTVRSSLSET 191
PP ++ V S+ + A +L ++ W PAAPS T PTV++++ T
Sbjct: 502 PPVAQTTVPSQETTAQQMLKAAAAWQQATGQTLQYQPAAPSAYQTQQPTVQATVQAT 558
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 36 LPPPSGKSFV----TSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSV 203
LPPPS + T + T + SR P H PSR ++ S++ SV
Sbjct: 235 LPPPSTPTISEMDSTKQEERQTHIAFGSRVAIPKHARKPSREGSSVGRSSSNMLNRSSSV 294
Query: 204 AQRLSSNP 227
Q SS+P
Sbjct: 295 TQLRSSSP 302
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 172 LTVGKFVRLLEGAAGCSGGHF 110
+TVGK + L+ G AG GHF
Sbjct: 366 MTVGKLIELIAGKAGVLEGHF 386
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRR 293
S+ +ETK SV +R + + W+W+ HHE RR
Sbjct: 902 STKNETKASVVERFNRTFKGWMWRYFT-------HHEXRR 934
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 587 LLEAATRGAFRSTSCVQWRGQTRRTPVRDPHLLEGREGGEDRST 456
L E G S C+ W + R PH LEG E+R T
Sbjct: 414 LKEDVCPGKVYSDECISWSKENVTDLNRTPHYLEGFSEVENRET 457
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 174 SSLSETKDSVAQRLSSNPRSWVWKLAAPRD 263
S+ SE K SV +R + ++W+W+ R+
Sbjct: 193 STRSELKSSVVERFNRTLKTWIWRWFTHRE 222
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 15 PSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLS 185
PS+++ S PPP+ S +S S ++S +SS ++ S S ++ + SS S
Sbjct: 573 PSSSSSSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAS 629
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = +3
Query: 12 SPSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLS 185
SPS S PP S +S S S + S P P PS SL + S LS
Sbjct: 963 SPSPPEYSSPPSSSQSTFLSSPSSTSLQQPSPSSQPHSEPRLPSPSLESSTLQTSQLS 1020
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 15 PSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPT 167
PS + PPP G+ +R + + SSR PP P P+R + P+
Sbjct: 2116 PSMGRYNTPPPMGQYGAPARPAMGPPPMGSSRYGPP-PPMGPARHSPSGPS 2165
>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 719
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 544 VYNGGARLVVLLFEIHICWKVEREARIDPPIHTEY 440
+Y GG R V +E KVERE R++ I +E+
Sbjct: 280 LYRGGRRNVFKTYEELYLSKVEREDRLEQGIQSEH 314
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 466 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD 329
+DPP+ +Y L+GG ++ + FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPE 801
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +3
Query: 12 SPSAATRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSET 191
SPS T S P S +S ++S LTSS P S LT+ + SS T
Sbjct: 193 SPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPLTSPSPLTSSSPLTSSSPLTSSSPLT 252
Query: 192 KDS 200
S
Sbjct: 253 SSS 255
>SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12)
Length = 349
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 17 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 196
+R + F + RD L V L + T ASS S +S LPD + + + R
Sbjct: 226 KRTFVFKVEMDETEYRDALLDLLVVKLQANGLLKTIASSRSRRRSKSLPDLASLVLNSSR 285
Query: 197 FRCP 208
CP
Sbjct: 286 -ECP 288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,367,136
Number of Sequences: 59808
Number of extensions: 493206
Number of successful extensions: 2067
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -