Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00468
(615 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 140 1e-35
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.19
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.19
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 25 0.78
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 24 1.0
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 24 1.4
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 23 3.1
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 23 3.1
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 4.1
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 5.5
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 22 5.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.2
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 7.2
U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein. 21 9.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.6
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 21 9.6
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 9.6
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 9.6
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 140 bits (339), Expect = 1e-35
Identities = 66/67 (98%), Positives = 67/67 (100%)
Frame = +3
Query: 306 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 485
DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLST
Sbjct: 67 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLST 126
Query: 486 FQQMWIS 506
FQQMWIS
Sbjct: 127 FQQMWIS 133
Score = 103 bits (247), Expect = 1e-24
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +2
Query: 110 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 253
EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG
Sbjct: 1 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 48
Score = 42.3 bits (95), Expect = 4e-06
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 232 LGYGSLRHHETTYNSIMKCDVDIRK 306
LG + HETTYNSIMKCDVDIRK
Sbjct: 42 LGMEACGIHETTYNSIMKCDVDIRK 66
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
PP+ + +G +IL SL+ F + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
PP+ + +G +IL SL+ F + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
PP+ + +G +IL SL+ F + + TTS A PL
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
PP+ + +G +IL SL+ F + + TTS A PL
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 324
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 24.6 bits (51), Expect = 0.78
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 117 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAAPRDHI*LHHEVRRG 296
PP + + P S LS T ++A+ L PR +L R I +H+ + RG
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPRMTAEQL--KRTDI-IHNYIMRG 734
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 24.2 bits (50), Expect = 1.0
Identities = 11/54 (20%), Positives = 26/54 (48%)
Frame = -3
Query: 595 AAGCWRQRRAVRLEALPVYNGGARLVVLLFEIHICWKVEREARIDPPIHTEYFL 434
A GCW + ++++ + L + R + ++ + I ++ + P+ EY L
Sbjct: 324 AVGCWNEHQSLQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGSNKPVKDEYML 377
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 23.8 bits (49), Expect = 1.4
Identities = 9/59 (15%), Positives = 26/59 (44%)
Frame = -3
Query: 607 IEQPAAGCWRQRRAVRLEALPVYNGGARLVVLLFEIHICWKVEREARIDPPIHTEYFLS 431
+ A GCW + + ++ + + + + + ++ + I + R++ EY L+
Sbjct: 323 VNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMIISVKIIQNLAYSGRMNRIHKNEYMLA 381
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 195 DSVAQRLSSNPRSWVWKLAAPRDHI 269
D + Q L + PR ++ L A DH+
Sbjct: 84 DKILQVLGATPRDFLQNLDALHDHL 108
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 195 DSVAQRLSSNPRSWVWKLAAPRDHI 269
D + Q L + PR ++ L A DH+
Sbjct: 84 DKILQVLGATPRDFLQNLDALHDHL 108
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 4.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 473 LPLYLPTDVDLEQEYDES 526
L L P D+ ++ EYD++
Sbjct: 479 LSLVFPNDIKVDHEYDQN 496
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 323 RIVRWYHHVPWNRRPYAK 376
RI+ +YH +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 323 RIVRWYHHVPWNRRPYAK 376
RI+ +YH +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 285 LHDGVICGLVVPQASIPKNEGWKRAS 208
L D + G+V PQ PK +RAS
Sbjct: 210 LADQIKNGIVSPQEERPKGINGRRAS 235
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.4 bits (43), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 285 LHDGVICGLVVPQASIPKNEGWKRAS 208
L D + G+V PQ PK +RAS
Sbjct: 205 LADQIKNGIVSPQEERPKGINGRRAS 230
>U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein.
Length = 182
Score = 21.0 bits (42), Expect = 9.6
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 124 CIQQLPREVLRTSRRSGHHYRKRKIPLPRGSLPTLVLGYG 243
C++ P + RR H IP+P+ + ++ YG
Sbjct: 32 CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYG 71
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.0 bits (42), Expect = 9.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 426 PPERKYSVWIGGSILASLSTFQQMWISNRSTTSLAPPL 539
P E V +G SIL SL F + TSL PL
Sbjct: 258 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPL 295
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 258 VVPQASIPKNEGWKRASGQRNLSFPIVMT 172
++ Q IP + +G+RN+ PIV +
Sbjct: 164 LLKQVKIPHDIAINSTTGKRNVVTPIVQS 192
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 9.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 315 RTSLTDVHVALHDGVICGLVVPQASIPKNEGW 220
R S + +H+ L I L+V +P GW
Sbjct: 67 RVSKSRIHIMLMHLAIADLLVTFLMMPLEIGW 98
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 105 SRKWPPLHP 131
+RK PPLHP
Sbjct: 98 TRKLPPLHP 106
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,490
Number of Sequences: 438
Number of extensions: 4316
Number of successful extensions: 23
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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