Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00467
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   4.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 186 FFFIIYKQNIKLFSIYLVFLFVELLILYFVAF-YLKYSFFF 305
           FFF+++  +   FS   +F   ++ I+YF +F  L + FFF
Sbjct: 120 FFFLLFFLSFS-FSFSFLFFLSQIFIVYFSSFPILHFLFFF 159


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 478 TMFV*LLLGLTIMNDAILLSINYVP 552
           ++F   ++ L I+N+ ILL+INY P
Sbjct: 237 SLFAYFIILLRIINEVILLAINYRP 261


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 249 QTRIPNKLKTTLCFVCRL*KKNDSFPHCCPKLRN 148
           +++  NK+KTT+  V +L   N + P  C +LR+
Sbjct: 447 ESQSSNKIKTTIFPVSQLLFSNANVPAMCQRLRS 480


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 125 LMAYF*Y*FLNFGQQ*GKLSFFFHNLQTKHKVVFNL 232
           LMAY  Y F N     G +S  F  +  KH   FN+
Sbjct: 273 LMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNM 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,142
Number of Sequences: 5004
Number of extensions: 46669
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)