Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00467
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    28   6.3  

>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 522 IIHYCET--KQQLNEHSYCALYKSIIEIL 442
           +IHY ET   QQL E   C ++KS  +IL
Sbjct: 607 VIHYLETLRPQQLLEQMVCTVFKSSADIL 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,966
Number of Sequences: 37544
Number of extensions: 223508
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)