Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00467
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   8.5  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   8.5  

>SB_9894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 411 FSHDSKIIMTPFRVNTIFIVIRFPMINSRFVL 316
           F HDSKI    +R   I I++ FP+I   F L
Sbjct: 201 FLHDSKIATKIYRELQIIIIVLFPIIAFIFYL 232


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 525 SIIHYCETKQQLNEHSYCALYKSIIEIL 442
           +++ YC  K  LN  SYC  YKS + +L
Sbjct: 275 NVLSYCPYKSYLNVLSYCP-YKSYLNVL 301


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 525 SIIHYCETKQQLNEHSYCALYKSIIEIL 442
           +++ YC  K  LN  SYC  YKS + +L
Sbjct: 223 NVLSYCPYKSYLNVLSYCP-YKSYLNVL 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,645
Number of Sequences: 59808
Number of extensions: 288771
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)