Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00467
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36720.1 68415.m04505 PHD finger transcription factor, putative     29   3.0  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    28   5.2  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    28   6.9  

>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 IIIFESCENVYRIQCF-MHNKISIIDLYKAQ*LCSFSCCLVS 508
           III + CE  Y I C    N + + +L K    CS  C  ++
Sbjct: 724 IIICDQCEKEYHIGCLSSQNIVDLKELPKGNWFCSMDCTRIN 765


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 404 CENVYRIQCFMHNKISIIDLYKAQ*LCSFSCCL 502
           C N  R+ C  H   SI+DL+++   CS+  CL
Sbjct: 314 CSNEERVFC-NHCATSIVDLHRSCPKCSYELCL 345


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +3

Query: 186 FFFIIYKQNIKLFSIYLVFLFVELLIL---YFVA--FYLKYSFFFTYYSKQI 326
           ++ I Y   + L + Y++FL +   ++   +F+   F L++SF+F Y + QI
Sbjct: 399 YWIISYAYFLALSTFYIIFLMIFGSVIGLKFFLLNDFSLQFSFYFVYINLQI 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,096
Number of Sequences: 28952
Number of extensions: 210805
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)