Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00466
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    30   0.27 
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         30   0.36 
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    29   0.83 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    28   1.1  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    27   3.4  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    27   3.4  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   3.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   5.9  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.8  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +2

Query: 83  MPLSEATSSDIKDGAIKQLKYDVASMENHRTKQHGHPALIDPGRSSGEPLSEGHYTIALP 262
           M +++  SS+IK  ++K   YDV  +E    KQ  +P L+D   +   P + G Y +AL 
Sbjct: 1   MNIAQPVSSEIK--SVKFGIYDVDDVEKISVKQIVNPVLLD---NLNHPTNGGLYDLALG 55

Query: 263 QHLE 274
            +L+
Sbjct: 56  PYLK 59


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 515 WKKEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKHVL 670
           W   +    +F    V +  YF  FS +LLF  F++T I  L  +F+  H L
Sbjct: 32  WLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLV-SFMGFHYL 82


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 536 LNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKHVL 670
           L V   F + + T   + S  +  T++ V   YY Y TFI   +L
Sbjct: 149 LYVIQLFLLPVITRDNFISLFMGNTLYLVALCYYSYLTFIGYQIL 193


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 587 FSFALLFTIFYVTFIYYLYNTFINK 661
           + + LL  I  ++  Y++YN F+NK
Sbjct: 4   YEYVLLVIILILSLCYFIYNNFLNK 28


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 527 INFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKHVLR 673
           +NFL   + F + +   F+ F  ++LFT +  +F   + N FI   V R
Sbjct: 90  LNFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNFFIAIEVSR 138


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 587 FSFALLFTIFYVTFIYYLYNTFINKH 664
           F+   LF IFY TF+Y      I KH
Sbjct: 664 FTLVALFAIFYSTFLYLWRAVNIAKH 689


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 599 LLFTIFYVTFIYYLYNTFINKH 664
           LLF    +TFIYYL+   +N +
Sbjct: 13  LLFVALGITFIYYLFTPSVNSN 34


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 443 QTISRQSMPLKRSTRKDSLHPFWDWKKEINFLNVFDY 553
           Q  SR +     S   D  +  WDW  ++ F+N   Y
Sbjct: 185 QLSSRLARFTNESVYSDWANKIWDWTTDVGFVNTTTY 221


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 497 LHPFWDWKKEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYY 637
           LHPF   +  +    +  +FF+  +  F  FSF+ LF +  +  +Y+
Sbjct: 102 LHPFTGSELSLFRCLLLFFFFLLFFLSFS-FSFSFLFFLSQIFIVYF 147


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 DGAIKQLKYDVASMENHRTKQHG 187
           DG  ++LKY    +ENH + Q G
Sbjct: 679 DGLPQRLKYSAVGLENHLSIQQG 701


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 310 KSLGTSWLSPHYLQVLGQSDSVVTFTERLTGRSSRID 200
           KS+ + W SP+  ++ G+ +      E +TG + R D
Sbjct: 112 KSITSLWSSPNLKEIDGEDEKKSVGQESITGSAKRKD 148


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 162 SILATSYLSCFIAPSLISEEVASE 91
           +I+  +++ C + P+L  EE+AS+
Sbjct: 85  NIVQKAFIHCIVGPTLTEEELASQ 108


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = -1

Query: 373 PLHSPGLP*ILLVVFRL*SSPKSLGTSWLSPHYLQVLGQSDSVVTFTERL 224
           PL S  LP   L V  L   PKS+    LS        QS SV    ER+
Sbjct: 371 PLQSTKLPGNSLTVGELYQEPKSIQLPELSVSRTTYSAQSSSVKNCNERI 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,006
Number of Sequences: 5004
Number of extensions: 56168
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)