Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00466
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605...    33   0.21 
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404...    29   3.5  
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199...    28   8.0  
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204...    28   8.0  

>01_06_1105 -
           34559694-34559852,34560298-34560312,34560451-34560522,
           34560695-34561549
          Length = 366

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
 Frame = +2

Query: 77  VGMPLSEATSSDIKDGA--IKQLKYDVASMENHRTKQHGHPALIDPGRSSGEPLSEGHYT 250
           VG  ++   + D+  G+  I+Q K  +AS + H   Q G      P R   +PL+ G   
Sbjct: 164 VGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHHHGQQGVQGAYFPNRLVPQPLNVGPGA 223

Query: 251 IALPQHLE-----IMRRQP*GAKTFGR*SQTKNN*KDSWQTR*M*WSRFKRRTNQRQRAV 415
           I  P + +      M      ++T GR      +  D    R        R +  R RA 
Sbjct: 224 ILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADKLMERRQKRMIKNRESAARSRAR 283

Query: 416 KRPHLKSMKQTISR---QSMPLKRSTRKDSLH 502
           K+ +   ++  +SR   +++ LKR    D LH
Sbjct: 284 KQAYTNELENKVSRLEEENVRLKRQKESDYLH 315


>03_01_0538 -
           4038954-4039444,4040172-4040248,4040838-4040911,
           4041115-4041203,4041481-4041563,4041645-4042233,
           4042915-4043101
          Length = 529

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 412 CSLPLIGSPLEATPLHSPG 356
           CS P+  SPL A PLHS G
Sbjct: 37  CSSPVAASPLVAMPLHSDG 55


>12_01_0273 -
           1989058-1989349,1989730-1989837,1990315-1990508,
           1990601-1990717,1990801-1990966,1991323-1991490,
           1991734-1993052
          Length = 787

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 PALIDPGRSSGEPLSEGHYTIALPQHLEIMRRQP*GAKT 307
           P L  PG+  GE +S+GH    L  +L++  R   G ++
Sbjct: 409 PTLPKPGKKQGETISKGHKNYELMLNLQLGIRHAVGRQS 447


>11_01_0272 -
           2042490-2042781,2043146-2043203,2043385-2043401,
           2043572-2043765,2043858-2043974,2044059-2044224,
           2044430-2044597,2044741-2046047
          Length = 772

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 PALIDPGRSSGEPLSEGHYTIALPQHLEIMRRQP*GAKT 307
           P L  PG+  GE +S+GH    L  +L++  R   G ++
Sbjct: 405 PTLPKPGKKQGETISKGHKNYELMLNLQLGIRHAVGRQS 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,788
Number of Sequences: 37544
Number of extensions: 358881
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)