Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00466
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08) 33 0.22
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 31 1.2
SB_27862| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24) 31 1.2
SB_13117| Best HMM Match : rve (HMM E-Value=0.00037) 31 1.2
SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16) 31 1.2
SB_5315| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 31 1.2
SB_4965| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047) 31 1.2
SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 31 1.2
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16) 31 1.2
SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 31 1.2
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 31 1.2
SB_10267| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4) 30 1.5
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18) 29 3.5
SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08) 29 4.7
SB_39463| Best HMM Match : U79_P34 (HMM E-Value=1.3) 28 6.2
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 28 6.2
SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2) 28 6.2
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.1
>SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08)
Length = 479
Score = 33.1 bits (72), Expect = 0.22
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Frame = +2
Query: 377 RFKRRTNQ---RQRAVKRPHLKSMKQTISRQS--MP----LKRSTRKDSLHPFWDWKKEI 529
R R T+Q +QR V+ H +Q + R + +P L RST + H F K +
Sbjct: 305 RLVRSTHQVPRQQRLVRSTHQVPRQQRLVRSTHQVPRQQRLVRSTHQVPRHDFDYRKMRV 364
Query: 530 NFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYY 637
L +F FF Y YF +I TFI+Y
Sbjct: 365 GLLMIFIAFFTPFYATISYFLINST-SIMSCTFIFY 399
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 343 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 389
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 617 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 663
>SB_27862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 103 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 149
>SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 355 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 401
>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
Length = 811
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 416 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 462
>SB_13117| Best HMM Match : rve (HMM E-Value=0.00037)
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 57 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 103
>SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16)
Length = 413
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 4 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 50
>SB_5315| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 537
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 382 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 428
>SB_4965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 57 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 103
>SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047)
Length = 567
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 255 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 301
>SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 730
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 505 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 551
>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 486 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 532
>SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 176 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 222
>SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16)
Length = 550
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 174 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 220
>SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 921
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 483 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 529
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 920 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 966
>SB_10267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R T ++ K L S++ I+ Q P KR+ + LHP+W+++ E+
Sbjct: 56 RITQIQEETRKDTTLHSLRAVIA-QGWPNKRAECPELLHPYWNYRDEL 102
>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
Length = 296
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 536 LNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLY 643
L DY++ Y Y+ Y+ + + +Y + YY Y
Sbjct: 255 LLAMDYYYYYYYYYYYYYYYYYYYHYYYYYYYYYYY 290
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +2
Query: 518 KKEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLY 643
K + ++ + Y++ Y Y+ Y+ + + +Y + YY Y
Sbjct: 252 KSRLLAMDYYYYYYYYYYYYYYYYYYYHYYYYYYYYYYYYYY 293
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 545 FDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKHV 667
+ Y +V +Y Y + + ++ YV YLY++ H+
Sbjct: 50 YTYTYVYVYVYVYVYVYVYVYVYVYVYIYIYLYDSIAYLHI 90
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +2
Query: 533 FLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKHV 667
++ ++ Y ++ IYTY +++ +T Y T+ Y T++ +V
Sbjct: 16 YIYIYIYIYIYIYTYTYTYTYTYTYTYTY-TYTYTYTYTYVYVYV 59
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 389 RTNQRQ-RAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKEI 529
R Q Q K P L S++ +S P KRS LH +W+++ EI
Sbjct: 1473 RVRQIQAETAKDPALTSLRSIVSN-GWPEKRSECPPHLHGYWNYRDEI 1519
>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
Length = 817
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 497 LHPFWDWKKEINFLNVFDYFFV 562
+H FW WKK I ++VF FFV
Sbjct: 231 IHVFW-WKKRIACISVFSTFFV 251
>SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +2
Query: 521 KEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLY 643
+ + F + + Y++ Y Y+ Y+ + + +Y + YY Y
Sbjct: 8 RPVIFPHNYAYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 48
>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
Length = 549
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 185 GHPALIDPGRSSGEPLSEGHYTIALPQH 268
GHP + D + SG P + GH TI P H
Sbjct: 419 GHPTIWDT-QPSGTPNNTGHPTICTPNH 445
>SB_39463| Best HMM Match : U79_P34 (HMM E-Value=1.3)
Length = 329
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 386 RRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDS 496
+RT R+R++KR K+ +QT R+ KR ++++
Sbjct: 131 KRTKARKRSLKRQKRKNERQTDKRRKRKRKRKRKRNT 167
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/33 (24%), Positives = 18/33 (54%)
Frame = +2
Query: 551 YFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNT 649
Y++ Y Y+ Y+ + + +Y + YY Y++
Sbjct: 134 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHS 166
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 551 YFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINKH 664
Y++ Y Y+ Y+ + + +Y + YY Y + H
Sbjct: 128 YYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYH 165
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 542 VFDYFFVKIYTYFRYFSFALLFTIFYVTFIYYLYNTF 652
V+ YFF+ F F+F + IF+ F+ +++N F
Sbjct: 689 VYPYFFL-----FVVFAFVVFIFIFFFAFVIFVFNAF 720
>SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)
Length = 229
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 533 FLNVFDYFFVKIYTYFRYFSFALL-FTIFYVTFIYYLYN-TFINKHVL 670
+ N F ++F + YF F+F F ++ F YLY FI+ +L
Sbjct: 145 YFNGFAFYFYGVAFYFDGFTFYFYGFAFYFYEFAVYLYGFAFISTDLL 192
>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 917
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 401 RQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLH 502
RQRA+ RPHL + T + L R + DS H
Sbjct: 697 RQRALYRPHLTNSSTTSPDRQRALYRLHQTDSAH 730
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,732,537
Number of Sequences: 59808
Number of extensions: 419708
Number of successful extensions: 1082
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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