Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00466
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical pr...    36   0.021
Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    28   5.4  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.5  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   9.5  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z50874-9|CAA90769.1|  202|Caenorhabditis elegans Hypothetical
           protein R10E4.9 protein.
          Length = 202

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 497 LHPFWDWKKEINFLNVFDYFF-VKIYTYFRYFSFALLFTIFYVTFIYYLYNTFINK 661
           L+P     + + F+NVF     + I    RYF ++LLFT+F++T + +LY +   K
Sbjct: 135 LYPVGFTCEALVFINVFFVSGKIPIDIKDRYFQYSLLFTVFFLTIVTFLYRSMSRK 190


>Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical
           protein C49C3.10 protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 470 LKRSTRKDSLHPFWDWKK---EIN-FLNVFDYFFVKIYTYFRYFSFALLFTIFYVTFIYY 637
           +K+    DSLH    W++   E+N  LN+ D   VK+Y+ F      L  T FY+    Y
Sbjct: 48  IKKVMLPDSLHDRQPWRRAQRELNCMLNIEDDNVVKMYSTFTPAENPLKMTEFYIV-REY 106

Query: 638 LYNTFIN 658
           ++ T  N
Sbjct: 107 MHGTMKN 113


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 512 DWKKEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYV 622
           +W KE +F  V  ++ + +++YF + +F L F + Y+
Sbjct: 43  NWHKEKDFPIVQFFYKMVLFSYFLFSTFILYFIVLYL 79


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +2

Query: 422 PHLKSMKQTI---SRQSMPLKRSTRKDSLHPFWDWKKEINFLNVFD---YFFVKIYTYFR 583
           P L+  +Q I    R+   ++R    D L    +    I FL  F+    F+ KIY +FR
Sbjct: 326 PELEQRRQEILDRMREIYNMRRPYPNDPLFLLENRNFPIFFLRSFEKTPIFWEKIYPFFR 385

Query: 584 YFSFALLFTIFYVTF 628
            F F   F  F V F
Sbjct: 386 IFRFFSNFYTFPVVF 400



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 524 EINFLNVF----DYFFVKIYTYF-RYFSFALLFTIFYVTFIYYLY 643
           EI+FL +F       F   Y YF R+F  +  F+ F V FIY +Y
Sbjct: 401 EIDFLPIFLVANIVIFHSFYLYFPRFFQVSHNFSSFSVLFIYCIY 445


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 371 ITFTGFAMNPSSCFSFVIISQKSWHLMAVS 282
           ++F GF +N    F F+ + + S+HL+ VS
Sbjct: 18  VSFVGFLINFFMLFHFLTLEKTSFHLLCVS 47


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 280  EETAMRCQDFWEMITNEKQLE 342
            EE A RC D WE+I  E++ E
Sbjct: 2931 EEAARRCMDRWEVIEREQRWE 2951


>Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical
           protein T23D8.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 71  QGVGMPLSEATSSDIKDGAIKQLKYDVASMENHRTKQHGHPALIDPGR 214
           +GV     E    ++ +G  K++K+D  S     T  + HP LI   R
Sbjct: 262 EGVIKDKEEYEIVEVDEGTNKKMKWDCESFATQYTNIYNHPTLIKEPR 309


>U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical
           protein K06A1.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 584 YFSFALLFTIF-YVTFIYYLYNTFINK 661
           YFSF L+F IF +  FIY     +INK
Sbjct: 108 YFSFPLIFFIFDFSLFIYVKDRKYINK 134


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 383 KRRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKE 526
           K++  + + A K     S K    ++  P K+  +++ +   W+W KE
Sbjct: 203 KKKKRKSKGAEKSKPSTSKKDAGGKKEPPKKKVKKEEDIEDIWEWWKE 250


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 313  PKSLGTSWLSPHYLQVLGQSDSVVTFTERL 224
            P+SL  SW S H + ++G+  S  +F  RL
Sbjct: 1135 PRSLADSWSSGHIVLLIGEMCSTRSFVLRL 1164


>Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical
           protein ZC455.7 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 533 FLNVFDYFF--VKIYTYFRYFSFALLFTIFYVT-FIYYLYNTFINKHVL 670
           F N F   F  + +    RY S A+L  I  ++ F+ +LYN  INK  L
Sbjct: 127 FQNFFGATFTLLTVNNILRYISAAVLAGIIAISSFLTFLYNCRINKRTL 175


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 383 KRRTNQRQRAVKRPHLKSMKQTISRQSMPLKRSTRKDSLHPFWDWKKE 526
           K++  + + A K     S K    ++  P K+  +++ +   W+W KE
Sbjct: 203 KKKKRKSKGAEKSKPSTSKKDAGGKKEPPKKKVKKEEDIEDIWEWWKE 250


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 126 APSLISEEVASESGIP 79
           APS+I EEV++ESG P
Sbjct: 616 APSMIDEEVSAESGAP 631


>AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical
           protein Y51A2B.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 485 RKDSLHPFWDWK--KEINFLNVFDYF 556
           RK   H  WD K  K INFL++F Y+
Sbjct: 6   RKIRAHQSWDPKFFKNINFLDIFSYW 31


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 449 ISRQSMPLKRSTRKDSLHPFWDWKKEINFLNVFDYFFVKIYTYFRYFSFALLFTIFYVTF 628
           IS + +    S +  S H +  W+  +  + VF   F+K +  + YF +   F+    T 
Sbjct: 201 ISVRKLSQLTSAQFHSPHIYIFWQSIV--VVVFKIHFIKEFISYLYFDYVYCFSFIISTL 258

Query: 629 IYYLYNT 649
            Y +Y T
Sbjct: 259 HYDIYAT 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,688,289
Number of Sequences: 27780
Number of extensions: 326496
Number of successful extensions: 989
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)