Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00466
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 277  NEETAMRCQDFWEMITNEK 333
            N ETA   ++ WE+I  EK
Sbjct: 1082 NVETAKTNEEMWELIDTEK 1100


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 563 KIYTYFRYFSFALLFTIFYVTFI 631
           K+  +F  FSF +L  +++ TF+
Sbjct: 361 KVSRFFFPFSFLILNVVYWSTFL 383


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 361  PGLP*ILLVVFRL*SSPKSLGTSWLSP 281
            PG P  + VV    SSP++L  SWL P
Sbjct: 1214 PGSPADIKVVV---SSPQALFISWLPP 1237


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 361  PGLP*ILLVVFRL*SSPKSLGTSWLSP 281
            PG P  + VV    SSP++L  SWL P
Sbjct: 1210 PGSPADIKVVV---SSPQALFISWLPP 1233


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/31 (29%), Positives = 11/31 (35%)
 Frame = +2

Query: 167 HRTKQHGHPALIDPGRSSGEPLSEGHYTIAL 259
           H T  H H     P      PL+   Y  A+
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLAHSSYPAAI 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,669
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)