Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00466
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17940.1 68417.m02672 expressed protein                             28   5.0  
At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922...    27   8.8  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    27   8.8  

>At4g17940.1 68417.m02672 expressed protein
          Length = 274

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 268 PGDNEETAMRCQDFWEMITNEKQLEGFMANPVN 366
           PGD E  +M  +  WE   +EK+ +G+    VN
Sbjct: 197 PGDGEALSMYGRLIWETKRDEKRAQGYFDQAVN 229


>At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922:
           DIE2/ALG10 family
          Length = 509

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 500 HPFWDWKKEINFLNVFDYFFVKIYTYFRYFSFALL 604
           +PF+ W+K IN   +  Y  V +Y Y  +FS   L
Sbjct: 387 YPFYLWRKIINAHWLMKYILVPVYVY-SWFSILTL 420


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 446 TISRQSMPLKRSTRKDSLHPFWDWKKE 526
           TIS  S  LK+S   D+LH F  WKKE
Sbjct: 113 TISVLSQDLKKSKFSDTLHRF--WKKE 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,629
Number of Sequences: 28952
Number of extensions: 293108
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)