Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00464
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    67   3e-12
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    30   0.38 
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    27   2.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.7  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.5  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   4.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.2  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   6.2  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   6.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   6.2  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.2  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    25   8.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 36/77 (46%), Positives = 44/77 (57%)
 Frame = +3

Query: 30  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 209
           +++K+H    H   R RV  R  DLD+I  DL E  +EK     +D DLPG  QHYC+ C
Sbjct: 6   RKRKHHSNGNHALFRTRVYGR--DLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCIEC 61

Query: 210 ARYFIDEQALNDHFKQK 260
           ARYF   QAL  H K K
Sbjct: 62  ARYFDSSQALLVHKKGK 78



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 251 QAKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQN 379
           + KVHKRRLK L  EPYT EE+E A   G  K +   K+   +
Sbjct: 76  KGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLADNS 118


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 596 PEKFQNINNIKDDLKKRKYNYNFEKLEELWHVYEELKQKRI 718
           PE   N   I + +K    NYNFE  + +WH+    K KR+
Sbjct: 53  PEDILNDKAINEAIKLLPQNYNFEIHKTIWHI-RLRKAKRV 92


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 180 LADLNQLFGSVIFQHFLPLNLGLFHP 103
           L +L  LF      +FLPL +GLF+P
Sbjct: 73  LVELLSLFYCAYVMYFLPLEVGLFNP 98


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +2

Query: 602 KFQNINNIKDDLKKRKYNYNFEKLEELWHVYEELKQK 712
           +FQ + N+K+DLK+++  +  E++E    + EE +QK
Sbjct: 61  EFQ-LENLKNDLKRKELEFEREQIELQRKLAEEHEQK 96


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 608 QNINNIKDDLKKRKYNYNFEKLE--ELWHVYEELKQK 712
           +NI  +K+DL+K +    F KLE   L  V + LK K
Sbjct: 689 KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGK 725


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 590 DFPEKFQNINNIKDDLKKRKYNYNFEKLEELWHVYEE 700
           +  +KF+  + I + L+K K     + +EELW  +++
Sbjct: 166 ELAKKFEEASQISNKLEKEKDATGSKSIEELWEEHQK 202


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +3

Query: 108 EIDQDLKEENA----EKLLNQKVDLDLPGA 185
           E+D + KEEN     EKL N KVD + P A
Sbjct: 121 EVDAEPKEENKKEIPEKLKNVKVDTENPSA 150


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 108 EIDQDLKEENAEKLLNQKVDLDLP 179
           EID D+K+E  + L  QK+  ++P
Sbjct: 189 EIDSDIKDEKQKSLEEQKIAPEIP 212


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 491  QNTKPIVTPKRYSALFINGAKATENYVYVTPYLDFPEKFQNINNIKDDLK 640
            Q+  P++   +     I+  K  E+Y+ V   + F E +  I + K DLK
Sbjct: 932  QSPNPVLKFHKLDGKIIDSFKTVEHYMEVLQPMIFMECWSQIQSTKLDLK 981


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 529 SSFHQWCQGNRKLCLCHSLFRLSRKISEH 615
           S+F  W      +CLCH +FRL+ K   H
Sbjct: 443 SNFFTW----GSICLCHIIFRLAFKKQGH 467


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 174 DLNQLFGSVIFQHFLPLNLGLFHPNLSFCY 85
           DL+++ G V +  ++ L +GLF   + F Y
Sbjct: 439 DLDEIVGMVFYGRYIVLLMGLFSMYVGFVY 468


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 665 QNYNCISFFSNHL-LYYLCSEIFLESLNKE 579
           Q +  +S FS HL  YYLCS   +E++ +E
Sbjct: 717 QLWGDMSDFSTHLSFYYLCSINLMENVEEE 746


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 475 ISTHCSKHETYCNPKKIFSSFHQW 546
           + THC K +TYC      S+F  +
Sbjct: 112 LQTHCIKRKTYCVKHLAISNFQSF 135


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 84  RNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 185
           + R+K +++   D    +A+K++NQ++ + LP A
Sbjct: 300 KQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSA 333


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 560 ENYVYVTPYLDFPEKFQNINNIKDDLKKRK 649
           E + +    +D  ++FQNI N +D+L+ +K
Sbjct: 97  ERWQFNVEMVDTADQFQNIGNKEDELRVQK 126


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 605 FQNINNIKDDLKKRKYNYNFEKLEELWHVYEELKQKRI 718
           +  +++I+    K     NF+ +E   HV EEL  KRI
Sbjct: 610 YGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRI 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,948
Number of Sequences: 5004
Number of extensions: 52457
Number of successful extensions: 223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)