Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00464
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151     48   1e-05
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997     31   1.2  
06_03_1489 + 30492702-30493760                                         30   2.1  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   6.4  
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    28   8.5  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    28   8.5  

>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
          Length = 124

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +3

Query: 162 VDLDLPGAAQHYCLHCARYFIDEQALNDHFKQK 260
           VD DLPG  Q YCLHC RYF  E    +H++ K
Sbjct: 54  VDEDLPGMGQFYCLHCDRYFASESVKEEHYRSK 86


>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
          Length = 471

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 39  KYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKL-LNQKVDLDLPGAAQHYCLHCAR 215
           KY      + +RWR   R   L+    DL  +  +++ L  K+  + PG A+ + LHC R
Sbjct: 49  KYGARTQLVSRRWRPLWRSAPLNLDVYDLSGQERKRVALASKILAEHPGPARRFSLHCFR 108


>06_03_1489 + 30492702-30493760
          Length = 352

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEEN-AEKLLNQKVDLDLPG 182
           KRK+      + K     +  K  +D I  D  ++N AEK LNQ VD   PG
Sbjct: 253 KRKELLLNQHNSKDTQEAKEIKPSIDSIRYDESKQNGAEKRLNQLVDAKDPG 304


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 364  FSFCCCFET--PVASSSL*LFYSIRFKL 287
            FSFC   E   PV+SSS   FYS+ FK+
Sbjct: 1660 FSFCRSMELKFPVSSSSASSFYSVTFKV 1687


>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 51  GDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQ 191
           GD + + R RVR  +  L E+ + +    A   +NQ++D++L G  Q
Sbjct: 52  GDPNFEVRERVRYTRDQLLELREIVDIPEAILRINQEIDIELHGEDQ 98


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 177 PGAAQHYCLHCARYFIDEQALNDHFKQ 257
           P   QH CL C   F   QAL  H ++
Sbjct: 568 PAPQQHQCLRCPMVFPTGQALGGHMRK 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,289
Number of Sequences: 37544
Number of extensions: 279364
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)