Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00464
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                34   0.10 
SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4)                  31   0.93 
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_37894| Best HMM Match : DUF16 (HMM E-Value=9.4)                     30   2.2  
SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   2.8  
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)                    28   6.6  
SB_51373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    28   8.7  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           28   8.7  
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   8.7  

>SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/67 (53%), Positives = 46/67 (68%)
 Frame = +3

Query: 30  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 209
           ++K+ H  D HLKK++R R R KDLD+I +DLK   A KLL+Q+VD DLPG  Q YCL C
Sbjct: 5   RKKRMHSNDKHLKKKYRTRKRTKDLDQIHEDLKPVKAAKLLSQEVDTDLPGCGQFYCLQC 64

Query: 210 ARYFIDE 230
           A   + E
Sbjct: 65  ALRMLKE 71



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +2

Query: 275 LKALELEPYTIEESERAAGHGSFK-TATKRKIVSQNIEKSQTD 400
           L+ L+  PYTIEESE AAG GS+  T+TK ++V Q+  + + D
Sbjct: 66  LRMLKEVPYTIEESEAAAGMGSYPFTSTKPELVDQHKAEMEID 108


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
 Frame = +3

Query: 6   RDQTDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKL---------LN 155
           R+++D ++ R    C       RWR  N+     +  +   K +    L         +N
Sbjct: 142 RERSDTSFSRTCLFCKQHFEGNRWRFANKSPGSSKQQRCSAKTQRLTSLNKMVLFLVHIN 201

Query: 156 QKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKQK 260
           + +DL        +CL+C + F D Q L DH ++K
Sbjct: 202 EFLDLLEEKLESLHCLYCEKVFKDRQILKDHMRKK 236


>SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4)
          Length = 201

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 24  TYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYC 200
           T  +K +HC +  LKK   V   KK LD+       E  EKL+ +K +LD    A H+C
Sbjct: 143 TLWKKLHHCNE-ELKKYSHVN--KKALDQFINF--SEQKEKLMKRKDELDKGYEASHHC 196


>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 189 QHYCLHCARYFIDEQALNDHFK 254
           ++ CLHCAR F  +  LN+H K
Sbjct: 252 EYKCLHCAREFYRKDNLNEHLK 273


>SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +2

Query: 539 INGAKATENYVYVTPYLDFPEKFQNINNIKDDLKKRKYNYNFEKLEELWHVYEELKQKRI 718
           I+   A+EN +    Y +  EK+QN    + + K+    + FE++ + +  Y E  ++R+
Sbjct: 175 ISSKPASENVISYYKYAE--EKYQNAGKPRSEFKEHARQFTFEEIGKRFRPYVEKVKERL 232


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 423 RKVQTKRRKLMTMIYKTHFYTLFKTRNLL*PQKDIQLFSSMVP 551
           ++ + +R KLM+++Y THF  L     ++ P    Q  S+ +P
Sbjct: 103 KEYKDRRHKLMSLLYNTHFGELHDKHLVIIPGNPNQFMSTDIP 145


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 87  NRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFK 254
           N+    ++ +Q L  ++  K   +K + +     ++ CLHCAR F  +  LN H K
Sbjct: 520 NQSFQCEKCEQSLNRKDTFKRHMKKYNQE----KEYKCLHCAREFYRKDNLNQHLK 571


>SB_37894| Best HMM Match : DUF16 (HMM E-Value=9.4)
          Length = 244

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 506 IVTPKRYSALFINGAKATENYVYVTPYLDFP 598
           +  P  + A    G++A E YVYV   LDFP
Sbjct: 161 LTVPGLFKATLKYGSRAAEQYVYVIKDLDFP 191


>SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 517 KKIFSSFHQWCQGNRKLCLCHSL 585
           KK+FSSF QW +   K+  C+SL
Sbjct: 771 KKVFSSFLQWGRNKTKILECNSL 793


>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +3

Query: 189 QHYCLHCARYFIDEQALNDHFKQKSINGD*---KPSSLNLIL*KSQRELLATGVSKQQQN 359
           Q+ C  CAR+ I   A        ++NGD    KP S      ++     ATG   +   
Sbjct: 721 QYQCTTCARHEIHINAHYAVVVFTALNGDSISVKPDSFLAQSCQASTGFFATGTKSKDIP 780

Query: 360 EKLFHKILRNLKQMKMVMLF*RKVQTKRRKLMT 458
             +F   L+++K       F  K +TK+ + +T
Sbjct: 781 ASIFGVFLKDIKTALQTSYFATKTETKKGEEIT 813


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 57  THLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCL 203
           T +K R +  + ++D ++ D D+ +E A  L ++K  L +PG  Q   L
Sbjct: 127 TKIKNRRQEGSDQEDSEDDDSDIDDELAGYLYDKKPSLPIPGYGQSMVL 175


>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 517 KKIFSSFHQWCQGNRKLCLCHSLFRLSRKISEHK 618
           + +  S+H +CQ  R+LC  H +  +   ++E K
Sbjct: 349 RAVKQSYHYYCQNTRQLCTGHRIVNVPYYVTEKK 382


>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 30  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEK 146
           KRK Y+C  T   KR R    +++++E +++ +EE  E+
Sbjct: 111 KRKLYYCNLTITIKRRRREEEEEEVEEEEEEEEEEEEEE 149


>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 308 EESERAAGHGSFKTAT-----KRKIVSQNIEKSQTDEDGDAILEESP 433
           + SER AGH  + + T     +  + S ++   + D+DGD +  E P
Sbjct: 460 DRSERQAGHSQWGSTTSLNISRGSVSSYDVAHGEDDDDGDGLHRERP 506


>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
          Length = 853

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 VIFQHFLPLNLGLFHPNLSFCYALSTAFLNVC 55
           +I   F+P ++ +   +  F YALST FLN+C
Sbjct: 13  LILAVFVPSHIAVIAISSFFGYALSTDFLNLC 44


>SB_51373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 24  TYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVD 167
           T+K  +++  D H+  R R +   +D +  D D+   N ++  N +VD
Sbjct: 7   THKDDEWNDSDRHISPRVRHKKTHEDDEWSDLDINTSNRKRHKNTRVD 54


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 27  YKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLK 128
           YK K++HCG    K    VR+ +K+ D+I  +L+
Sbjct: 661 YKEKRFHCGQVDEK----VRSLQKERDQIFSELE 690


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 150  LNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKQ 257
            L Q    + P A ++YC HC + F +  AL  H K+
Sbjct: 992  LQQNPAKEDPRANENYCDHCDKTFEETDALRLHVKK 1027


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 266 KRRLKALELEPYTIEESER-AAGHGSFKTATKRKIVSQNIEKSQTDEDGD 412
           +R L A++ +P +   ++   A  G+ KT  +    S+  EKS TD+D D
Sbjct: 574 RRYLDAIKEKPVSANSTQTDTAQDGTTKTEIEETSNSEPTEKSHTDKDDD 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,800,161
Number of Sequences: 59808
Number of extensions: 349166
Number of successful extensions: 1237
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)