Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00464
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 180 GAAQHYCLHCARYFIDEQALNDHFK 254
           G   ++C HC R F+    L  H +
Sbjct: 34  GEKPYHCSHCDRQFVQVANLRRHLR 58


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 556 NRKLC-LCHSLFRLSRKISEHK 618
           N  +C LCH +FR    ++ HK
Sbjct: 400 NSAVCALCHKVFRTLNSLNNHK 421


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 547 CQGNRKLCLCHSLFRLSRKISE 612
           C G R   +C +  +  +KISE
Sbjct: 266 CYGGRNRKICEAFVKTGKKISE 287


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 493 KHETYCNPKKIFSSFHQWCQGNRKL 567
           KH    NP K+   F     GN++L
Sbjct: 178 KHAVKFNPAKVKLRFENLFDGNKEL 202


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 566 YVYVTPYLDFPEKFQNINNIKDDLKKRKYNYN 661
           Y++ T      EKF+ +  I+DD+   +   N
Sbjct: 549 YIWFTTSGTISEKFRKLIRIEDDVATLRMKLN 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,095
Number of Sequences: 438
Number of extensions: 3529
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)