Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00464
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 48 6e-06
At1g54920.2 68414.m06269 expressed protein 31 1.0
At1g54920.1 68414.m06270 expressed protein 31 1.0
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 30 1.8
At5g54460.1 68418.m06782 wound-responsive protein-related contai... 29 2.3
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 5.4
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 7.1
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 28 7.1
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 28 7.1
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta... 28 7.1
At1g28430.1 68414.m03495 cytochrome P450, putative similar to cy... 28 7.1
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi... 28 7.1
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 27 9.4
At4g02405.1 68417.m00325 expressed protein 27 9.4
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 27 9.4
At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At1g56660.1 68414.m06516 expressed protein 27 9.4
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 27 9.4
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +3
Query: 159 KVDLDLPGAAQHYCLHCARYFIDEQALNDHFKQK 260
++D DLPG Q YCLHC RYF + +DHFK K
Sbjct: 47 QLDEDLPGMGQFYCLHCDRYFSNVSVRDDHFKTK 80
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 171 DLPGAAQHYCLHCARYFIDEQALNDHFKQK 260
DLPG Q CL C R F + ++ HFK K
Sbjct: 131 DLPGMGQFNCLLCHRNFSNASVMDYHFKTK 160
>At1g54920.2 68414.m06269 expressed protein
Length = 890
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 9 DQTDMTYKRK--KYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 164
D D+ +K K YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 573 DYQDLFHKLKIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 627
>At1g54920.1 68414.m06270 expressed protein
Length = 430
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 9 DQTDMTYKRK--KYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 164
D D+ +K K YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 237 DYQDLFHKLKIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 291
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 9 DQTDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDE-----IDQ-DLKEENAEKLLNQKVDL 170
D + T + + H + L++ +K++++E +D DL + ++ K
Sbjct: 407 DFLENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVDMADLSTHLPKSFISSKDVK 466
Query: 171 DLPGAAQHYCLHCARYFIDEQALNDHFKQ 257
+L A Q LH RYF+ E + D FK+
Sbjct: 467 NLIAACQ--ALHRVRYFLQENSSRDDFKK 493
>At5g54460.1 68418.m06782 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 141
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 12 QTDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQK 161
+ D+ R+KY G T LKK + RK ++ +KEE AE + +K
Sbjct: 73 ELDLQKGREKYK-GATRLKKEKKKWERKNKRNQSKSPVKEEGAEPVKEEK 121
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 39 KYHCGDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQK 161
K GDT+L +++ R+ K ++ ID+DL +E + + LN+K
Sbjct: 1045 KEEFGDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEK 1086
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 30 KRKKYHCGDTHLKK--RWRVRNRKKDLDEIDQDLKEE 134
+RKK T L + + RVRN KK +DE D D ++
Sbjct: 275 RRKKCSVAKTRLTRGRKRRVRNTKKGVDEDDDDFVDD 311
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 99 DLDEIDQDLKEENAEKLLNQKVDLDLPG 182
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 99 DLDEIDQDLKEENAEKLLNQKVDLDLPG 182
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9UBS4 DnaJ
homolog subfamily B member 11 precursor Homo sapiens;
contains Pfam profile PF00226 DnaJ domain
Length = 300
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 63 LKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 185
L++ V N+KK +IDQ L+EE L+ ++DL + GA
Sbjct: 167 LERTGGVSNKKKGSKQIDQKLQEE-----LSNELDLQIKGA 202
>At1g28430.1 68414.m03495 cytochrome P450, putative similar to
cytochrome P450 (CYP93A1) GI:1435059 from [Glycine max]
Length = 521
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = -2
Query: 189 VLLLADLNQLFGSVIFQHFLPLNLGLFHPNLSFCYALSTAFLNVCRHNDISCAY 28
+LL A +++ F + ++ L+L +FH + + STA+ ++ + NDI+ +Y
Sbjct: 55 LLLFASIHKCFQKISSKYGPFLHLRIFHVPIVLVSSASTAY-DIFKTNDINVSY 107
>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 764
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 602 KFQNINNIKDDLKKRKYN---YNFEKLEELWHVYEELKQK 712
K QN+N + + YN Y+F + +++W VY+E+K K
Sbjct: 131 KDQNLN-----VSTQSYNSVLYHFRETDKMWDVYKEIKDK 165
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 99 DLDEIDQDLKEENAEKLLNQKVDLDLPG 182
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVHMDISG 56
>At4g02405.1 68417.m00325 expressed protein
Length = 333
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 159 KVDLDLPGAAQHYCLHCARYFIDEQAL 239
K DLD+ QHYCL A FID++ L
Sbjct: 99 KKDLDIHEQQQHYCL--ATKFIDDKLL 123
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 105 DEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDH 248
DE +++K+++ EK ++ D D + C +C R F QAL H
Sbjct: 68 DESSENIKDKDKEK--DKDKDKDNNNNRRFECHYCFRNFPTSQALGGH 113
>At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 418
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -2
Query: 117 GLFHPNLSFCYALSTAFLNVCRHNDISCAYMSCRSDLVP 1
G FH C + + R N C Y C +DLVP
Sbjct: 220 GCFHRICVTCMRKPFSSEQILRGNTAICPYPDCENDLVP 258
>At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 397
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -2
Query: 117 GLFHPNLSFCYALSTAFLNVCRHNDISCAYMSCRSDLVP 1
G FH C + + R N C Y C +DLVP
Sbjct: 220 GCFHRICVTCMRKPFSSEQILRGNTAICPYPDCENDLVP 258
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 90 RKKDLDEIDQDLKEENAEKLLNQKVDLD 173
+KK+ DE DQ++KE++++K N+K + D
Sbjct: 231 KKKEHDETDQEMKEKDSKK--NKKKEKD 256
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 33 RKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCA 212
+K C + K+ K+D D+ D+D EE E+ + + H C C
Sbjct: 173 KKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEED-KSTAHIARKRSNAHECTICH 231
Query: 213 RYFIDEQALNDH 248
R F QAL H
Sbjct: 232 RVFSSGQALGGH 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,706
Number of Sequences: 28952
Number of extensions: 255365
Number of successful extensions: 911
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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