Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00462
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    28   7.2  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    28   9.5  

>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 345 KAPKLFGWWFRRPTSWWSEIPCVFFAMFIIV 253
           + P+   WW RR  S WS +  +    F ++
Sbjct: 330 RKPRTCNWWPRRAISLWSPVVAILLLAFAVL 360


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -3

Query: 351 WTKAPKLFGWWFRRPTSWWSEIPCVFFAMFIIVESIRVWNNNEKKFSKAQNQPMKLKGLF 172
           W+      G     P    + +   FF +  I+  I  W N    F KAQN P+   GLF
Sbjct: 297 WSTVSSYLGSPLASPWFATANVAAGFFFIMYIITPIAYWFN----FYKAQNFPIFSDGLF 352

Query: 171 ST 166
           ++
Sbjct: 353 TS 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,611
Number of Sequences: 37544
Number of extensions: 266964
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)