Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.021
UniRef50_P91448 Cluster: Prion-like-(Q/n-rich)-domain-bearing pr...    34   4.1  
UniRef50_A7HNC7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_UPI0000161EAF Cluster: UPI0000161EAF related cluster; n...    33   9.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.5 bits (93), Expect = 0.021
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = -3

Query: 596 LLLRWVDELTAHLVLNGHRSP 534
           LLLRWVDELTAHLVL+G+ SP
Sbjct: 155 LLLRWVDELTAHLVLSGYWSP 175


>UniRef50_P91448 Cluster: Prion-like-(Q/n-rich)-domain-bearing
           protein protein 66; n=1; Caenorhabditis elegans|Rep:
           Prion-like-(Q/n-rich)-domain-bearing protein protein 66
           - Caenorhabditis elegans
          Length = 896

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = +1

Query: 550 FNTRWAVSSSTHLSNNKKNTIN*LHRKTNFVTRRIFLC*M------CCSITKKWVSVTIL 711
           F T W V + TH+S +KKNT N  +R+T F T+      +      CC++TK  V++  +
Sbjct: 447 FCTFWFVLAVTHVSLSKKNTKN--NRRTVFTTKDTLNMNLRQSKWICCNLTKSTVNIFRI 504

Query: 712 E 714
           E
Sbjct: 505 E 505


>UniRef50_A7HNC7 Cluster: Putative uncharacterized protein; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: Putative
           uncharacterized protein - Fervidobacterium nodosum
           Rt17-B1
          Length = 243

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 120 VGIFYFLRSKVNVSRFKLRRE-KYRCTFSFRRAVTVLLYYALWFILITSIAFPTVQENDR 296
           VGIF FL +   V + K  RE  Y   F+      VL+ Y++ FIL+  I FP  ++ + 
Sbjct: 21  VGIFLFLVNLSFVEQIKYLREYNYLVHFAKNSIAFVLIVYSIPFILMYFIKFPNKKKFEM 80

Query: 297 KLK 305
            L+
Sbjct: 81  NLE 83


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 370 LFSMHLNTFCICLQLVVSGYFRSWTSTTPEAEP-NRCLLYYKYIQG 504
           +F +  + F   + LV   +  SWTST P A+P +RCL+  ++  G
Sbjct: 26  IFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCLVNLRHTYG 71


>UniRef50_UPI0000161EAF Cluster: UPI0000161EAF related cluster; n=1;
           Lymphocystis disease virus 1|Rep: UPI0000161EAF
           UniRef100 entry - Lymphocystis disease virus 1
          Length = 465

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
 Frame = +2

Query: 59  IPKSLTTQWY*KVNFIT*I*RRYILFSSIKSKRF*I*AAP*KI----------SMYLLIP 208
           IP   T   Y K+ F T    R+ L   + +KR+ I   P  I           + +LI 
Sbjct: 15  IPYKTTFDLYAKLGFTT---YRWPLVPIVTAKRYLINFKPGAIIILPSFIRNNELTILIK 71

Query: 209 KSGNCIIILCIMVYFDNKYSVSYSTRE 289
           KS +C II+  +++F NKY+V Y+T++
Sbjct: 72  KS-DCYIIILEVIFFINKYTVVYATKQ 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,183,539
Number of Sequences: 1657284
Number of extensions: 14862371
Number of successful extensions: 26608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26607
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)