Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    26   4.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.4  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   8.4  

>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 VSGYFRSWTSTTPEAEPNRCLLYYKYIQ 501
           V  YFR  TS T   +P   + YY+Y++
Sbjct: 208 VCRYFRPGTSDTSWNQPIHLITYYRYLR 235


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 564 PPGVKWSPEPIDICNVNAAPTL 499
           PP +K    P+DI N++AA  L
Sbjct: 227 PPSIKTDASPVDIKNMDAAEKL 248


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 420 KWLLSLMDVNNARGRAKPLPT---IL*IYTRWV 509
           KW +SL+D+     RA+ L T   I+ ++ +WV
Sbjct: 542 KWRISLLDIKELSIRAEKLHTTNEIIGVWNQWV 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,220
Number of Sequences: 5004
Number of extensions: 66366
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)