Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 100 IHFLIPLCC**FRYKYLIMKIATGINNNIY 11
           I  L+ +CC  F   YL+MK A G++  +Y
Sbjct: 178 IVILVRVCCAAFSVVYLLMKAAIGVSELVY 207


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 413  SCRHIQKVLRCIENKHFINRYVFNITIRIDVTASSKF*FPVILLYCRKRYTCYQ 252
            +C  + ++ RC E   F+N YV    IR  +T + K     ++  C +   CY+
Sbjct: 1150 TCSQLSELFRCCEMDSFVN-YVSKKAIRAVLTTAPKDIREQLVNQCAQILACYR 1202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,974,670
Number of Sequences: 59808
Number of extensions: 464373
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)