Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    34   0.12 
AF039720-13|AAB96705.1|  245|Caenorhabditis elegans Hypothetical...    31   1.1  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    30   1.5  
Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = +1

Query: 550 FNTRWAVSSSTHLSNNKKNTIN*LHRKTNFVTRRIFLC*M------CCSITKKWVSVTIL 711
           F T W V + TH+S +KKNT N  +R+T F T+      +      CC++TK  V++  +
Sbjct: 447 FCTFWFVLAVTHVSLSKKNTKN--NRRTVFTTKDTLNMNLRQSKWICCNLTKSTVNIFRI 504

Query: 712 E 714
           E
Sbjct: 505 E 505


>AF039720-13|AAB96705.1|  245|Caenorhabditis elegans Hypothetical
           protein F33D11.11 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 693 PFFSYATTHLTQKNTTRDKICFTV 622
           PF    T+H+T KNT+ + +CF V
Sbjct: 21  PFSDVVTSHMTLKNTSTNPVCFKV 44


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 364 KCLFSMHLNTFCICLQLVVSGYFRSW 441
           +CLF+ +LN  C+   + V GY  SW
Sbjct: 189 ECLFTCYLNKNCMAASVNVDGYCNSW 214


>Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical
           protein F59A2.4a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 211 LRNEKVHRYF-SRRSLNLETFTFD 143
           +R E VHRYF   R+ NL  FTFD
Sbjct: 296 MRGENVHRYFYGTRANNLYPFTFD 319


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 561 PGVKWSPEPIDICNVNAAPTLYIFIV**AAVWLCLW 454
           PG  WSPE  +I  V     L+++++    V LC++
Sbjct: 61  PGFDWSPEEKEILEVYKLQMLFLWVISAIGVILCIF 96


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 561 PGVKWSPEPIDICNVNAAPTLYIFIV**AAVWLCLW 454
           PG  WSPE  +I  V     L+++++    V LC++
Sbjct: 61  PGFDWSPEEKEILEVYKLQMLFLWVISAIGVILCIF 96


>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 340 ILNTYLLIKCLFSMHLNTFCICL 408
           I+ TY+ + CL S++L  F ICL
Sbjct: 179 IIPTYIHVSCLVSINLLAFVICL 201


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
           protein H04J21.1 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 475 SGLALPLALLTSMSESNHLPPVVDIYRKY*DA*KINILLIGMYLILPYV 329
           +G+   +  L ++SE  H+ PV++  R Y +A K  + L  +  ILP V
Sbjct: 628 NGIFDKINALNTISEIQHVQPVINAIRFYREATKEQLSLDSVAKILPNV 676


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,792,367
Number of Sequences: 27780
Number of extensions: 362781
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)