Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00456
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.14 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.42 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.73 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 681  YATTHLTQKNTTRDKICFTV 622
            + T H TQ   T DKICFT+
Sbjct: 1686 HCTIHRTQVKETDDKICFTM 1705


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +1

Query: 370 LFSMHLNTFCICLQLVV-SGYFRS 438
           LF+M L+TF IC+ +VV + +FRS
Sbjct: 308 LFTMILDTFSICVTVVVLNVHFRS 331


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 108 LKFNVGIFYFLRSKVNVSRFKLRREKYRCTF 200
           L +  G+FY+L + VN   + +   K+R  F
Sbjct: 329 LTYMSGVFYYLSTTVNPLLYNIMSNKFREAF 359


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 371 KHFINRYVFNITIRIDVTAS 312
           K+F N+Y  NIT+ I+ T++
Sbjct: 104 KNFANKYCGNITLNIESTSN 123


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 182 KISMYLLIPKSGNCIIILCIMVYF 253
           K  +Y      G CI IL I VY+
Sbjct: 165 KKGVYFAFRDQGACISILAIKVYY 188


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 358 LIKCLFSMHLNTFCICLQLVVSGYFRSW 441
           +I    S  L  FC+   +V++ Y+ +W
Sbjct: 91  VINLAISNFLMMFCMSPPMVINCYYETW 118


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 358 LIKCLFSMHLNTFCICLQLVVSGYFRSW 441
           +I    S  L  FC+   +V++ Y+ +W
Sbjct: 57  VINLAISDFLMMFCMSPPMVINCYYETW 84


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 608 VFFLLLLRWVDELTAHLV 555
           +FFL LL W    T  L+
Sbjct: 287 IFFLFLLAWTPYATVALI 304


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 608 VFFLLLLRWVDELTAHLV 555
           +FFL LL W    T  L+
Sbjct: 287 IFFLFLLAWTPYATVALI 304


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 281 YCRKRYTCY 255
           YCR+ ++CY
Sbjct: 10  YCRRNFSCY 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,141
Number of Sequences: 438
Number of extensions: 5351
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)